Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   A4W88_RS06665 Genome accession   NZ_CP017275
Coordinates   1292376..1293653 (-) Length   425 a.a.
NCBI ID   WP_251930847.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287376..1298653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS06660 (A4W88_06605) - 1290641..1292350 (-) 1710 WP_056947067.1 proline--tRNA ligase -
  A4W88_RS06665 (A4W88_06610) eeP 1292376..1293653 (-) 1278 WP_251930847.1 RIP metalloprotease RseP Regulator
  A4W88_RS06670 (A4W88_06615) - 1293860..1294648 (-) 789 WP_016265347.1 phosphatidate cytidylyltransferase -
  A4W88_RS06675 (A4W88_06620) - 1294679..1295434 (-) 756 WP_011374957.1 isoprenyl transferase -
  A4W88_RS06680 (A4W88_06625) - 1295602..1298349 (+) 2748 WP_056947073.1 YhgE/Pip domain-containing protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46684.38 Da        Isoelectric Point: 9.6305

>NTDB_id=197267 A4W88_RS06665 WP_251930847.1 1292376..1293653(-) (eeP) [Latilactobacillus sakei strain TMW 1.1398]
MAAIIAFIIIFGILVVVHEFGHFYMAKRSGILVREFSVGMGPKLFATRKNGTTYTIRWLPLGGYVRMAGMADYESEIEAG
TQATLILDEQGRVQQINTSDKVTTLNGVPFQIAKTDLQKELWVEGYEGGDESEMKRYPVLHDATIIEADGTEVQIAPVDV
QFQSATLINRMLTNFAGPFNNFILAILAFILFAFLSGGVPQQSNQIGTVQENSAAQKAGLKANDRLLKVDNKKVASFTDF
SAIISEHPNETVAVRVQRGATEKTIKVTPKAVKVANQKEKVGQVGVTQKVKMDHSLKAKISYGFTQAWSIASQIFKILGS
FLTGGFSLDKLSGPVGMYSMTTQFTQQGFNALVYFLAFLSLNLGIMNLIPIPALDGGKLVLNIIEAIRRKPISPEKEGIV
TLIGVGIMVLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=197267 A4W88_RS06665 WP_251930847.1 1292376..1293653(-) (eeP) [Latilactobacillus sakei strain TMW 1.1398]
TTGGCTGCAATTATTGCGTTTATCATCATCTTTGGTATTTTAGTAGTCGTTCATGAATTTGGGCATTTTTACATGGCTAA
GCGCTCAGGCATTTTGGTGCGAGAGTTTTCTGTCGGCATGGGACCTAAATTATTTGCAACTCGCAAAAACGGCACAACTT
ACACCATCCGGTGGTTACCATTAGGTGGTTACGTTCGAATGGCGGGAATGGCCGACTATGAATCTGAAATTGAAGCGGGC
ACACAAGCGACTTTAATTTTAGACGAACAAGGACGCGTTCAACAGATTAATACAAGTGACAAGGTCACCACGTTAAACGG
GGTACCTTTCCAAATTGCTAAAACAGATTTACAAAAAGAATTGTGGGTCGAAGGTTACGAAGGCGGCGACGAGTCAGAAA
TGAAACGTTATCCCGTCTTACATGATGCGACGATTATCGAAGCAGACGGAACGGAAGTGCAAATCGCACCCGTGGATGTC
CAATTCCAATCAGCAACGTTGATTAATCGGATGTTAACGAACTTTGCCGGACCATTTAATAACTTCATTCTCGCAATTCT
GGCCTTTATCCTCTTCGCTTTTCTAAGCGGGGGTGTGCCACAGCAATCCAATCAAATTGGCACGGTACAAGAGAATTCAG
CTGCTCAAAAGGCAGGCTTAAAAGCCAACGATCGTCTTTTGAAGGTTGATAACAAAAAAGTAGCGAGCTTCACTGACTTT
AGTGCGATAATTTCAGAACACCCTAACGAAACTGTTGCGGTGCGCGTTCAACGGGGCGCAACTGAAAAGACAATCAAGGT
GACACCCAAGGCTGTCAAAGTGGCTAACCAAAAAGAAAAGGTTGGTCAAGTAGGGGTCACACAAAAAGTCAAAATGGATC
ATAGCCTAAAGGCCAAGATTTCTTACGGCTTTACACAAGCTTGGTCAATTGCCAGTCAGATTTTCAAGATCCTCGGGTCA
TTTTTAACCGGTGGGTTCTCACTAGATAAATTATCGGGGCCGGTCGGCATGTATTCAATGACGACCCAATTTACCCAACA
AGGCTTTAATGCGTTAGTTTATTTCTTAGCGTTCTTATCACTTAATTTGGGGATTATGAATCTAATTCCGATTCCGGCGT
TAGATGGTGGTAAGTTAGTCTTGAACATTATTGAAGCGATTCGTCGCAAACCTATTTCACCTGAAAAAGAAGGCATCGTG
ACATTAATCGGTGTCGGTATTATGGTGTTATTAATGGTCTTAGTCACGTGGAATGATATACAACGATTTTTCTTTTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-258)

Peptidase family M50 (Peptidase_M50)

(6-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.157

100

0.492
  eeP Streptococcus thermophilus LMG 18311

47.917

100

0.487

Multiple sequence alignment