Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | A4W86_RS06825 | Genome accession | NZ_CP017272 |
| Coordinates | 1359087..1359392 (-) | Length | 101 a.a. |
| NCBI ID | WP_016265375.1 | Uniprot ID | A0A9N7J126 |
| Organism | Latilactobacillus sakei strain TMW 1.1239 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1354087..1364392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W86_RS06790 (A4W86_06740) | - | 1354526..1354891 (+) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| A4W86_RS06800 (A4W86_06750) | - | 1355434..1355892 (-) | 459 | WP_035145008.1 | hypothetical protein | - |
| A4W86_RS06805 (A4W86_06755) | - | 1355947..1357143 (-) | 1197 | WP_011374993.1 | acetate kinase | - |
| A4W86_RS06810 (A4W86_06760) | - | 1357165..1358175 (-) | 1011 | WP_016265372.1 | class I SAM-dependent methyltransferase | - |
| A4W86_RS06815 (A4W86_06765) | - | 1358299..1358637 (-) | 339 | WP_035145011.1 | hypothetical protein | - |
| A4W86_RS06820 (A4W86_06770) | comGF | 1358600..1359112 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A4W86_RS06825 (A4W86_06775) | comGE | 1359087..1359392 (-) | 306 | WP_016265375.1 | hypothetical protein | Machinery gene |
| A4W86_RS06830 (A4W86_06780) | comGD | 1359379..1359831 (-) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A4W86_RS06835 (A4W86_06785) | comGC | 1359803..1360102 (-) | 300 | WP_011374999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A4W86_RS06840 (A4W86_06790) | comGB | 1360099..1361106 (-) | 1008 | WP_011375000.1 | type II secretion system F family protein | Machinery gene |
| A4W86_RS06845 (A4W86_06795) | comGA | 1361099..1361989 (-) | 891 | WP_016265378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A4W86_RS06850 (A4W86_06800) | - | 1362104..1362835 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A4W86_RS06855 (A4W86_06805) | - | 1362926..1363426 (-) | 501 | WP_099947696.1 | VanZ family protein | - |
| A4W86_RS06860 (A4W86_06810) | - | 1363523..1363897 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11439.42 Da Isoelectric Point: 11.1577
>NTDB_id=197195 A4W86_RS06825 WP_016265375.1 1359087..1359392(-) (comGE) [Latilactobacillus sakei strain TMW 1.1239]
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKITTKAGESVAINWTTD
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKITTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=197195 A4W86_RS06825 WP_016265375.1 1359087..1359392(-) (comGE) [Latilactobacillus sakei strain TMW 1.1239]
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTGGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGATAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTGGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGATAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
99.01 |
100 |
0.99 |