Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A4W86_RS05305 Genome accession   NZ_CP017272
Coordinates   1063138..1064004 (-) Length   288 a.a.
NCBI ID   WP_035145813.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1058138..1069004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS05290 (A4W86_05255) topA 1059374..1061458 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  A4W86_RS05295 (A4W86_05260) - 1061708..1062142 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  A4W86_RS05300 (A4W86_05265) - 1062171..1063037 (-) 867 WP_035145810.1 NAD(P)H-binding protein -
  A4W86_RS05305 (A4W86_05270) dprA 1063138..1064004 (-) 867 WP_035145813.1 DNA-processing protein DprA Machinery gene
  A4W86_RS05310 (A4W86_05275) - 1064059..1064820 (-) 762 WP_035145815.1 ribonuclease HII -
  A4W86_RS05315 (A4W86_05280) ylqF 1064822..1065670 (-) 849 WP_035145817.1 ribosome biogenesis GTPase YlqF -
  A4W86_RS05320 (A4W86_05285) - 1066090..1066989 (-) 900 WP_016265147.1 hypothetical protein -
  A4W86_RS05325 - 1067199..1067366 (-) 168 WP_251950472.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.80 Da        Isoelectric Point: 8.5887

>NTDB_id=197186 A4W86_RS05305 WP_035145813.1 1063138..1064004(-) (dprA) [Latilactobacillus sakei strain TMW 1.1239]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWTLSALEIAQIARLPERYWPTFQASFQSTDLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=197186 A4W86_RS05305 WP_035145813.1 1063138..1064004(-) (dprA) [Latilactobacillus sakei strain TMW 1.1239]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGACGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACGGACCTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATTTTAGATAAAGACTACCCTCAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAGCAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGCTTGTTACTATCTGAATACGCTCTCGGTACACCAGCCCGGCGTTATCAATTTCCAGCCCGGAATA
AAATCATTGCGGGGTTATGTCATAGCTTAATTGTGACGGAGGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTTTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGTGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986
  dprA Legionella pneumophila strain ERS1305867

37.5

100

0.375

Multiple sequence alignment