Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FAM18149p_RS12780 Genome accession   NZ_CP017261
Coordinates   2430152..2430760 (+) Length   202 a.a.
NCBI ID   WP_016378371.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain FAM18149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2425152..2435760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAM18149p_RS12760 (FAM18149p_11930) gyrA 2425653..2428274 (+) 2622 WP_016385862.1 DNA gyrase subunit A -
  FAM18149p_RS12765 (FAM18149p_11935) deoC 2428379..2429083 (-) 705 WP_003600673.1 deoxyribose-phosphate aldolase -
  FAM18149p_RS12770 (FAM18149p_11940) ssb 2429266..2429697 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  FAM18149p_RS12775 (FAM18149p_11945) rpsF 2429825..2430121 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  FAM18149p_RS12780 (FAM18149p_11950) ssb 2430152..2430760 (+) 609 WP_016378371.1 single-stranded DNA-binding protein Machinery gene
  FAM18149p_RS12785 (FAM18149p_11955) rpsR 2430847..2431083 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  FAM18149p_RS12790 (FAM18149p_11960) - 2431524..2433002 (+) 1479 WP_003600674.1 cytochrome ubiquinol oxidase subunit I -
  FAM18149p_RS12795 (FAM18149p_11965) cydB 2432995..2434013 (+) 1019 Protein_2335 cytochrome d ubiquinol oxidase subunit II -
  FAM18149p_RS12800 (FAM18149p_11970) - 2434040..2434234 (+) 195 WP_003600287.1 hypothetical protein -
  FAM18149p_RS12805 (FAM18149p_11975) - 2434661..2435581 (-) 921 WP_096836470.1 IS30 family transposase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21575.38 Da        Isoelectric Point: 5.2151

>NTDB_id=197079 FAM18149p_RS12780 WP_016378371.1 2430152..2430760(+) (ssb) [Lacticaseibacillus paracasei strain FAM18149]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPKNPPSFGSQGAPNNASSS
NPGQNPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=197079 FAM18149p_RS12780 WP_016378371.1 2430152..2430760(+) (ssb) [Lacticaseibacillus paracasei strain FAM18149]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCG
AATCCGGGTCAAAATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGC
TAATAATGGCAAGCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.128

100

0.584
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.505

100

0.495

Multiple sequence alignment