Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FAM18149p_RS08345 Genome accession   NZ_CP017261
Coordinates   1576368..1576853 (-) Length   161 a.a.
NCBI ID   WP_096836333.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain FAM18149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1571368..1581853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAM18149p_RS08285 (FAM18149p_07815) - 1571681..1572025 (-) 345 WP_096836317.1 hypothetical protein -
  FAM18149p_RS08290 (FAM18149p_07820) - 1572026..1572391 (-) 366 WP_096836319.1 YopX family protein -
  FAM18149p_RS08295 (FAM18149p_07825) - 1572388..1572690 (-) 303 WP_096836321.1 hypothetical protein -
  FAM18149p_RS08300 (FAM18149p_07830) - 1572687..1573058 (-) 372 WP_096836322.1 hypothetical protein -
  FAM18149p_RS08305 (FAM18149p_07835) - 1573048..1573260 (-) 213 WP_096836324.1 hypothetical protein -
  FAM18149p_RS08310 (FAM18149p_07840) - 1573250..1573795 (-) 546 WP_096836326.1 DUF1642 domain-containing protein -
  FAM18149p_RS08315 (FAM18149p_07845) - 1573792..1573974 (-) 183 WP_096836328.1 hypothetical protein -
  FAM18149p_RS08320 (FAM18149p_07850) - 1573971..1574753 (-) 783 WP_096836329.1 DNA cytosine methyltransferase -
  FAM18149p_RS08325 (FAM18149p_07855) - 1574750..1575001 (-) 252 WP_032797610.1 hypothetical protein -
  FAM18149p_RS08330 (FAM18149p_07860) - 1575013..1575396 (-) 384 WP_005686928.1 DUF1064 domain-containing protein -
  FAM18149p_RS08335 (FAM18149p_07865) - 1575399..1575848 (-) 450 WP_096836331.1 hypothetical protein -
  FAM18149p_RS08340 (FAM18149p_07870) - 1575845..1576060 (-) 216 WP_032964570.1 helix-turn-helix domain-containing protein -
  FAM18149p_RS08345 (FAM18149p_07875) ssb 1576368..1576853 (-) 486 WP_096836333.1 single-stranded DNA-binding protein Machinery gene
  FAM18149p_RS08350 (FAM18149p_07880) - 1576865..1577827 (-) 963 WP_096836335.1 Lin1244/Lin1753 domain-containing protein -
  FAM18149p_RS08355 (FAM18149p_07885) - 1577839..1578741 (-) 903 WP_335617644.1 PD-(D/E)XK nuclease-like domain-containing protein -
  FAM18149p_RS08360 (FAM18149p_07890) - 1578623..1579489 (-) 867 WP_045601324.1 recombinase RecT -
  FAM18149p_RS16190 - 1579503..1579673 (-) 171 WP_096836339.1 hypothetical protein -
  FAM18149p_RS08370 (FAM18149p_07895) - 1579675..1579917 (-) 243 WP_080940780.1 hypothetical protein -
  FAM18149p_RS16440 - 1579905..1580033 (-) 129 WP_003582707.1 hypothetical protein -
  FAM18149p_RS08380 (FAM18149p_07900) - 1580036..1580362 (-) 327 WP_003581994.1 hypothetical protein -
  FAM18149p_RS08385 (FAM18149p_07905) - 1580353..1580826 (-) 474 WP_096836341.1 helix-turn-helix domain-containing protein -
  FAM18149p_RS08390 - 1580889..1581047 (-) 159 WP_011674683.1 hypothetical protein -
  FAM18149p_RS08395 (FAM18149p_07910) - 1581136..1581336 (+) 201 WP_040167039.1 KTSC domain-containing protein -
  FAM18149p_RS16040 - 1581333..1581482 (-) 150 WP_155598324.1 hypothetical protein -
  FAM18149p_RS08400 (FAM18149p_07915) - 1581479..1581721 (-) 243 WP_096836343.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17675.35 Da        Isoelectric Point: 4.8947

>NTDB_id=197066 FAM18149p_RS08345 WP_096836333.1 1576368..1576853(-) (ssb) [Lacticaseibacillus paracasei strain FAM18149]
MLNSVSLTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSSNGERETDFISCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNSPKSQQMANASATETTNTSQTTPNASRANTTDPFANNGQPIDIQDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=197066 FAM18149p_RS08345 WP_096836333.1 1576368..1576853(-) (ssb) [Lacticaseibacillus paracasei strain FAM18149]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGCTACACACAAAGTGGCACGGCGGTAGG
CTCGTTCACGCTGGCCGTTGATCGCCAGTTCCGCAGTTCAAACGGAGAACGTGAAACTGACTTTATCAGTTGTGTGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCATATCCAAACGCGC
ACGTATGATAACGCGCAAGGGCAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAGCCCTAAATCACAGCAAATGGCTAATGCATCAGCAACAGAGACCACAAACACGAGTCAAACGACTC
CAAATGCTTCGCGAGCGAATACCACGGATCCTTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.535

100

0.689
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.54

Multiple sequence alignment