Detailed information NTG0196944

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BB197_RS10905
• Genome accession: NZ_CP021863
• Coordinates: 2074525..2075634 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain SG-M163
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2069525..2080634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BB197_RS10880 (BB197_10865)	-	2069897..2070736 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
BB197_RS10885 (BB197_10870)	pgsA	2070736..2071278 (-)	543	WP_000239224.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BB197_RS10890 (BB197_10875)	yfmH	2071401..2072684 (-)	1284	WP_000217765.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BB197_RS10895 (BB197_10880)	yfmF	2072686..2073930 (-)	1245	WP_000706190.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BB197_RS10900 (BB197_10885)	yaaA	2074169..2074522 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
BB197_RS10905 (BB197_10890)	recF	2074525..2075634 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
BB197_RS10910 (BB197_10895)	-	2075646..2076512 (-)	867	WP_000398683.1	GRP family sugar transporter	-
BB197_RS10915 (BB197_10900)	-	2076568..2077230 (-)	663	WP_001871057.1	helix-turn-helix domain-containing protein	-
BB197_RS10920 (BB197_10905)	guaB	2077305..2078786 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
BB197_RS10925 (BB197_10910)	-	2078943..2079428 (-)	486	WP_001034427.1	arginine repressor	-
BB197_RS10930 (BB197_10915)	-	2079438..2080118 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=196944 BB197_RS10905 WP_000264870.1 2074525..2075634(+) (recF) [Streptococcus agalactiae strain SG-M163]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=196944 BB197_RS10905 WP_000264870.1 2074525..2075634(+) (recF) [Streptococcus agalactiae strain SG-M163]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447