Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BL1202_RS19980 Genome accession   NZ_CP017247
Coordinates   3824178..3825572 (-) Length   464 a.a.
NCBI ID   WP_069500926.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL1202     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3819178..3830572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1202_RS19945 (BL1202_04087) flgL 3819368..3820279 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  BL1202_RS19950 (BL1202_04088) flgK 3820290..3821813 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  BL1202_RS19955 (BL1202_04089) - 3821829..3822305 (-) 477 WP_003185711.1 flagellar protein FlgN -
  BL1202_RS19960 (BL1202_04090) flgM 3822324..3822590 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  BL1202_RS19965 (BL1202_04091) - 3822670..3823089 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  BL1202_RS19970 comFC 3823148..3823882 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  BL1202_RS19975 (BL1202_04092) - 3823839..3824123 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  BL1202_RS19980 (BL1202_04093) comFA 3824178..3825572 (-) 1395 WP_069500926.1 DEAD/DEAH box helicase Machinery gene
  BL1202_RS19985 (BL1202_04094) - 3825695..3826537 (-) 843 WP_003185726.1 DegV family protein -
  BL1202_RS19990 (BL1202_04095) degU 3826657..3827346 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  BL1202_RS19995 (BL1202_04096) degS 3827428..3828585 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  BL1202_RS20000 (BL1202_04097) - 3828799..3829437 (+) 639 WP_003185736.1 YigZ family protein -
  BL1202_RS20005 (BL1202_04098) - 3829452..3830528 (+) 1077 WP_003185737.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52916.57 Da        Isoelectric Point: 9.8972

>NTDB_id=196898 BL1202_RS19980 WP_069500926.1 3824178..3825572(-) (comFA) [Bacillus licheniformis strain BL1202]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPPADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNEARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=196898 BL1202_RS19980 WP_069500926.1 3824178..3825572(-) (comFA) [Bacillus licheniformis strain BL1202]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTCCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAGCCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGAGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.55

98.707

0.558

Multiple sequence alignment