Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FORC46_RS07175 Genome accession   NZ_CP017229
Coordinates   1398129..1398440 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain FORC_046 isolate Not reported     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393129..1403440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC46_RS07155 (FORC46_1406) ctsE 1393998..1395557 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  FORC46_RS07160 (FORC46_1407) ctsX 1395547..1396134 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FORC46_RS07165 (FORC46_1408) ctsP 1396138..1396746 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FORC46_RS07170 (FORC46_1409) ctsD 1396739..1398151 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FORC46_RS07175 (FORC46_1410) ctsR 1398129..1398440 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  FORC46_RS07180 (FORC46_1411) nifJ 1398464..1402024 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FORC46_RS07185 (FORC46_1412) - 1402117..1402758 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=196685 FORC46_RS07175 WP_002855438.1 1398129..1398440(-) (ctsR) [Campylobacter jejuni strain FORC_046 isolate Not reported]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=196685 FORC46_RS07175 WP_002855438.1 1398129..1398440(-) (ctsR) [Campylobacter jejuni strain FORC_046 isolate Not reported]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment