Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH89_RS10205 Genome accession   NZ_CP021844
Coordinates   2015536..2016012 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain EC1515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010536..2021012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH89_RS10160 (CDH89_10150) sbmC 2011029..2011502 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  CDH89_RS10165 (CDH89_10155) yeeA 2011700..2012758 (+) 1059 WP_001200890.1 FUSC family protein -
  CDH89_RS10170 (CDH89_10160) tmaR 2012930..2013259 (+) 330 WP_000450409.1 DUF496 family protein -
  CDH89_RS29175 (CDH89_10165) - 2013360..2013542 (-) 183 WP_157698277.1 EutP/PduV family microcompartment system protein -
  CDH89_RS28830 - 2013662..2013742 (+) 81 WP_023441679.1 hypothetical protein -
  CDH89_RS28180 - 2014031..2014111 (-) 81 Protein_1901 hypothetical protein -
  CDH89_RS10185 (CDH89_10175) yeeW 2014157..2014351 (-) 195 WP_000988600.1 DUF5983 family protein -
  CDH89_RS10190 (CDH89_10180) - 2014413..2014721 (-) 309 Protein_1903 TA system toxin CbtA family protein -
  CDH89_RS10195 (CDH89_10185) cbeA 2014810..2015178 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CDH89_RS10200 (CDH89_10190) yeeT 2015252..2015473 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CDH89_RS10205 (CDH89_10195) radC 2015536..2016012 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CDH89_RS10210 (CDH89_10200) - 2016028..2016507 (-) 480 WP_000860076.1 antirestriction protein -
  CDH89_RS10215 (CDH89_10205) - 2016589..2017410 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  CDH89_RS10225 (CDH89_10215) - 2017631..2018041 (-) 411 WP_000846713.1 hypothetical protein -
  CDH89_RS10230 (CDH89_10220) - 2018057..2018740 (-) 684 WP_000775500.1 hypothetical protein -
  CDH89_RS10235 (CDH89_10225) - 2018876..2019946 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CDH89_RS10240 (CDH89_10230) - 2019943..2020848 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=196682 CDH89_RS10205 WP_001186773.1 2015536..2016012(-) (radC) [Escherichia coli strain EC1515]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196682 CDH89_RS10205 WP_001186773.1 2015536..2016012(-) (radC) [Escherichia coli strain EC1515]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment