Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BHS02_RS02035 Genome accession   NZ_CP017196
Coordinates   362155..363942 (+) Length   595 a.a.
NCBI ID   WP_174248925.1    Uniprot ID   -
Organism   Leuconostoc gelidum subsp. gelidum strain TMW 2.1618     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 357155..368942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS02_RS02015 (BHS02_02000) - 357295..358698 (+) 1404 WP_174248922.1 ABC transporter substrate-binding protein/permease -
  BHS02_RS02020 (BHS02_02005) - 358698..359450 (+) 753 WP_014947680.1 amino acid ABC transporter ATP-binding protein -
  BHS02_RS02025 (BHS02_02010) - 359546..360979 (+) 1434 WP_174248923.1 ABC transporter substrate-binding protein/permease -
  BHS02_RS02030 (BHS02_02015) - 361029..362057 (+) 1029 WP_174248924.1 competence protein CoiA -
  BHS02_RS02035 (BHS02_02020) pepF 362155..363942 (+) 1788 WP_174248925.1 oligoendopeptidase F Regulator
  BHS02_RS02040 (BHS02_02025) - 364055..364450 (+) 396 WP_029508482.1 cytidine deaminase -
  BHS02_RS02045 (BHS02_02030) - 364495..365412 (+) 918 WP_174248926.1 phosphoglycerate dehydrogenase -
  BHS02_RS02050 (BHS02_02035) - 365469..366437 (-) 969 WP_174248927.1 LacI family DNA-binding transcriptional regulator -
  BHS02_RS02055 (BHS02_02040) - 366631..367647 (+) 1017 WP_010015354.1 zinc-dependent alcohol dehydrogenase family protein -
  BHS02_RS02060 (BHS02_02045) - 367652..368386 (+) 735 WP_010015353.1 hypothetical protein -
  BHS02_RS02065 (BHS02_02050) - 368449..368832 (+) 384 WP_010015351.1 VOC family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67628.50 Da        Isoelectric Point: 4.5901

>NTDB_id=196597 BHS02_RS02035 WP_174248925.1 362155..363942(+) (pepF) [Leuconostoc gelidum subsp. gelidum strain TMW 2.1618]
MAQLLRNEVPEDLTWDLSTIFDSDSDWELAFAAVKQETEMLSRFVGHVGDSAELLQSALEADLKIERELEKVYVYAHQIY
DQDTTNQSYAAFNSRVQALWAEVSQATAYFQPEVLNIPDDKLAVYLMTDGLKQYAHLFETLRALKPHTLAAEQEKLLAGV
GDIFNASENTFGALDNSDITFGDVHTESGETVALTNGLYSLLLESKSRDLRREAFETLYDSYIGLQNTFASTLSSHIKGH
NFLAKVRHYNSAREAAILPHNVPTTVFDTLSQTVAANLPLLHRFVSLRKRILGVTDVHSYDLYVPLVDEVDFDVTYEKAQ
EIVLAALAPLGQDYLDIVKKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRH
NQDYHYGDYPIFLAEIASTTNESLLTDYLLKTNSDPKFQAYVLNQYLDGFKGTVFRQTQFAEFENWIHEQSAAGVALTAD
HMSTYYSELNQKYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIIKNDGAEDYKAYLKAGSSDYPLN
VILKAGVDMSQADYLKQAFNVFKTRLNQLESLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=196597 BHS02_RS02035 WP_174248925.1 362155..363942(+) (pepF) [Leuconostoc gelidum subsp. gelidum strain TMW 2.1618]
ATGGCACAACTATTACGCAATGAAGTACCTGAAGATCTTACGTGGGATCTGTCTACAATTTTTGATTCTGATAGTGACTG
GGAACTCGCTTTTGCTGCTGTTAAACAGGAAACGGAAATGTTGAGTCGTTTTGTTGGACATGTTGGCGATTCAGCTGAAT
TGTTACAATCTGCATTAGAGGCTGATTTGAAAATAGAACGGGAATTGGAAAAAGTGTATGTATATGCACATCAAATTTAT
GATCAAGACACAACAAATCAATCGTATGCGGCTTTCAATTCACGCGTACAAGCACTTTGGGCTGAAGTAAGTCAGGCAAC
AGCCTATTTCCAACCCGAAGTTTTAAACATACCGGATGATAAATTGGCAGTTTATTTAATGACTGATGGCTTAAAACAGT
ATGCACATTTATTTGAAACATTACGTGCTTTAAAGCCACACACGTTAGCTGCGGAACAAGAAAAATTATTAGCTGGTGTG
GGTGATATTTTTAATGCATCAGAAAACACGTTTGGTGCACTTGATAATTCAGATATAACTTTTGGGGATGTGCATACGGA
ATCAGGCGAGACTGTAGCGTTGACTAATGGCCTATATAGCTTGCTACTTGAATCAAAGTCACGGGATTTGCGCCGCGAAG
CATTTGAAACATTGTATGACAGTTACATCGGGTTGCAAAATACATTTGCTTCAACTTTGTCATCTCATATTAAAGGACAT
AACTTTTTAGCTAAAGTGCGTCATTATAATTCAGCACGCGAAGCTGCTATCTTACCACACAACGTCCCAACAACTGTTTT
TGATACGTTAAGTCAAACGGTAGCGGCTAATTTACCGTTGTTACATCGCTTTGTATCATTACGTAAAAGAATCTTAGGCG
TAACAGATGTGCATAGTTATGATTTGTATGTGCCATTGGTGGATGAAGTTGATTTTGACGTCACATATGAAAAGGCGCAA
GAAATTGTGTTAGCTGCTTTAGCACCATTAGGCCAAGATTATCTTGATATTGTCAAAAAAGCATTTGATGAACGCTGGAT
TGATGTTGTTGAAAATAAAGGGAAACGCTCAGGAGCATACTCGAGTGGGACTTATGATACAAATCCTTTTATTTTGTTAA
ACTGGCAAAATAATTTGAATAATGTTTATACGCTGGCTCATGAAATGGGTCATTCTGTTCATTCTTATTTAACACGACAT
AACCAGGATTATCATTATGGTGACTATCCGATTTTCTTAGCAGAAATTGCTTCGACAACTAATGAAAGTTTACTAACAGA
TTATTTACTAAAAACAAATAGTGACCCTAAATTTCAAGCATATGTTTTAAATCAATATCTTGATGGCTTTAAAGGAACTG
TCTTTCGTCAGACGCAGTTTGCGGAATTTGAAAATTGGATTCATGAGCAAAGTGCAGCGGGTGTCGCTTTGACTGCTGAC
CACATGAGCACCTATTATAGTGAACTTAACCAAAAATATTATGGACCAGATTTGTTTCCGGATGAAGAAATTGCGTATGA
ATGGACACGAATACCACATTTTTATTATAACTACTATGTTTATCAGTACGCAACGGGTGAAGCGGCAGCGACAACATTAG
CAGAACGCATCATTAAAAATGATGGCGCAGAAGATTATAAAGCGTACTTAAAAGCCGGTTCATCGGACTACCCTTTGAAC
GTGATTTTAAAAGCTGGTGTGGATATGAGTCAAGCTGATTATTTAAAGCAGGCATTCAATGTGTTTAAAACACGATTAAA
TCAATTAGAATCATTATTAATCAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.664

0.523

Multiple sequence alignment