Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDL16_RS33700 Genome accession   NZ_CP021775
Coordinates   6965489..6966163 (-) Length   224 a.a.
NCBI ID   WP_087921013.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6960489..6971163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS33670 (CDL16_33665) - 6960911..6962245 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  CDL16_RS33675 (CDL16_33670) - 6962311..6962673 (+) 363 WP_003096551.1 cupin domain-containing protein -
  CDL16_RS33680 (CDL16_33675) rpmG 6962810..6962965 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  CDL16_RS33685 (CDL16_33680) rpmB 6962977..6963213 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  CDL16_RS33690 (CDL16_33685) - 6963569..6965149 (+) 1581 WP_023094948.1 ABC transporter substrate-binding protein -
  CDL16_RS33700 (CDL16_33695) radC 6965489..6966163 (-) 675 WP_087921013.1 RadC family protein Machinery gene
  CDL16_RS33705 (CDL16_33700) coaBC 6966303..6967511 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CDL16_RS33710 (CDL16_33705) dut 6967519..6967974 (+) 456 WP_003096567.1 dUTP diphosphatase -
  CDL16_RS33715 (CDL16_33710) - 6968011..6970623 (+) 2613 WP_023094949.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24976.71 Da        Isoelectric Point: 6.9688

>NTDB_id=196469 CDL16_RS33700 WP_087921013.1 6965489..6966163(-) (radC) [Pseudomonas aeruginosa strain Pa58]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQDSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=196469 CDL16_RS33700 WP_087921013.1 6965489..6966163(-) (radC) [Pseudomonas aeruginosa strain Pa58]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGTTGTTCCAGGACAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.282

93.304

0.46
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.393