Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDG41_RS31930 Genome accession   NZ_CP021774
Coordinates   6683291..6683965 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain Pa124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6678291..6688965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG41_RS31900 (CDG41_31895) - 6678728..6680062 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  CDG41_RS31905 (CDG41_31900) - 6680128..6680490 (+) 363 WP_003096551.1 cupin domain-containing protein -
  CDG41_RS31910 (CDG41_31905) rpmG 6680627..6680782 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  CDG41_RS31915 (CDG41_31910) rpmB 6680794..6681030 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  CDG41_RS31920 (CDG41_31915) - 6681386..6682966 (+) 1581 WP_023096329.1 ABC transporter substrate-binding protein -
  CDG41_RS31930 (CDG41_31925) radC 6683291..6683965 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  CDG41_RS31935 (CDG41_31930) coaBC 6684105..6685313 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CDG41_RS31940 (CDG41_31935) dut 6685321..6685776 (+) 456 WP_003096567.1 dUTP diphosphatase -
  CDG41_RS31945 (CDG41_31940) - 6685813..6688419 (+) 2607 WP_023094267.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=196366 CDG41_RS31930 WP_003096559.1 6683291..6683965(-) (radC) [Pseudomonas aeruginosa strain Pa124]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=196366 CDG41_RS31930 WP_003096559.1 6683291..6683965(-) (radC) [Pseudomonas aeruginosa strain Pa124]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGTGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCTCACAACGCGGCGGCGTTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397