Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHS06_RS06665 Genome accession   NZ_CP017171
Coordinates   1577809..1578900 (+) Length   363 a.a.
NCBI ID   WP_140861138.1    Uniprot ID   -
Organism   Myxococcus xanthus strain KF3.2.8c11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572809..1583900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS06_RS06640 (BHS06_06535) - 1573098..1573304 (+) 207 WP_140861135.1 hypothetical protein -
  BHS06_RS06645 (BHS06_06540) glmU 1573304..1574716 (+) 1413 WP_373284013.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BHS06_RS06650 (BHS06_06545) glmS 1574824..1576659 (+) 1836 WP_140861136.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  BHS06_RS06660 (BHS06_06550) - 1576893..1577696 (+) 804 WP_140861137.1 hypothetical protein -
  BHS06_RS06665 (BHS06_06555) recA 1577809..1578900 (+) 1092 WP_140861138.1 recombinase RecA Machinery gene
  BHS06_RS06670 (BHS06_06560) - 1579065..1581290 (+) 2226 WP_140861139.1 alkaline phosphatase D family protein -
  BHS06_RS06675 (BHS06_06565) - 1581494..1582051 (+) 558 WP_140861140.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38980.68 Da        Isoelectric Point: 6.8710

>NTDB_id=196272 BHS06_RS06665 WP_140861138.1 1577809..1578900(+) (recA) [Myxococcus xanthus strain KF3.2.8c11]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGRENVKDYLREHPEIAK
DIEGRVLEKYGIGKSGAPVAAAPDESAPAEGGSEKRGRVKAAK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=196272 BHS06_RS06665 WP_140861138.1 1577809..1578900(+) (recA) [Myxococcus xanthus strain KF3.2.8c11]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAACTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCAATGATGCGAGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTGGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCCGAGGCGCAGAAGCGCGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATTCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGG
GCGGTAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGACAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGGAAGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCCCGTGAGGGCGACCTCATCGACCTCGCCTCCAACGAGAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAATGGTGAGCGCATCGGTCAGGGCCGGGAGAACGTGAAGGACTACCTGCGCGAGCACCCGGAGATTGCCAAG
GACATCGAAGGCCGCGTGCTGGAGAAGTACGGCATCGGCAAGTCGGGTGCGCCCGTCGCCGCGGCGCCGGACGAGTCCGC
GCCGGCCGAAGGTGGCAGCGAGAAGCGCGGCCGCGTGAAGGCCGCGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.827

89.256

0.614
  recA Acinetobacter baumannii D1279779

63.112

95.592

0.603
  recA Pseudomonas stutzeri DSM 10701

65.758

90.909

0.598
  recA Vibrio cholerae strain A1552

66.258

89.807

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

89.807

0.595
  recA Acinetobacter baylyi ADP1

62.428

95.317

0.595
  recA Glaesserella parasuis strain SC1401

61.696

94.215

0.581
  recA Helicobacter pylori strain NCTC11637

60.405

95.317

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

60.933

94.49

0.576
  recA Neisseria gonorrhoeae strain FA1090

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Helicobacter pylori 26695

59.827

95.317

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.185

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

91.185

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.963

89.256

0.562
  recA Streptococcus mitis NCTC 12261

57.345

97.521

0.559
  recA Streptococcus pneumoniae Rx1

61.329

91.185

0.559
  recA Streptococcus pneumoniae D39

61.329

91.185

0.559
  recA Streptococcus pneumoniae R6

61.329

91.185

0.559
  recA Streptococcus pneumoniae TIGR4

61.329

91.185

0.559
  recA Streptococcus mitis SK321

59.819

91.185

0.545
  recA Streptococcus pyogenes NZ131

60

90.909

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

91.185

0.543
  recA Streptococcus mutans UA159

58.912

91.185

0.537
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.185

0.529

Multiple sequence alignment