Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BHS06_RS05980 Genome accession   NZ_CP017171
Coordinates   1415235..1416602 (-) Length   455 a.a.
NCBI ID   WP_140861020.1    Uniprot ID   -
Organism   Myxococcus xanthus strain KF3.2.8c11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410235..1421602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS06_RS05965 (BHS06_05860) - 1411031..1412821 (+) 1791 WP_237079208.1 methyl-accepting chemotaxis protein -
  BHS06_RS05970 (BHS06_05865) - 1412805..1414298 (-) 1494 WP_140861018.1 sensor histidine kinase -
  BHS06_RS05975 (BHS06_05870) - 1414607..1415152 (+) 546 WP_140861019.1 dihydrofolate reductase family protein -
  BHS06_RS05980 (BHS06_05875) radA 1415235..1416602 (-) 1368 WP_140861020.1 DNA repair protein RadA Machinery gene
  BHS06_RS05985 (BHS06_05880) - 1416785..1417054 (+) 270 WP_020478235.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BHS06_RS05990 (BHS06_05885) bioB 1417195..1418235 (+) 1041 WP_140861021.1 biotin synthase BioB -
  BHS06_RS05995 (BHS06_05890) bioF 1418243..1419418 (+) 1176 WP_140861022.1 8-amino-7-oxononanoate synthase -
  BHS06_RS06000 (BHS06_05895) bioD 1419411..1420094 (+) 684 WP_140861023.1 dethiobiotin synthase -
  BHS06_RS06005 (BHS06_05900) - 1420227..1420505 (+) 279 WP_026114139.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48300.74 Da        Isoelectric Point: 7.6453

>NTDB_id=196271 BHS06_RS05980 WP_140861020.1 1415235..1416602(-) (radA) [Myxococcus xanthus strain KF3.2.8c11]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGSARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLAAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=196271 BHS06_RS05980 WP_140861020.1 1415235..1416602(-) (radA) [Myxococcus xanthus strain KF3.2.8c11]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTGGGGAAGTGTCCGGACTG
CGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAGCGACGTCCGGCCTGGGGTGCCTCGGGCGGTT
CGGCGCGGCCCATGCTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGCTGGGTGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGTTGGACCGGCTGGCGCGTCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGAGACGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGGCGGCGACG
GAGGCGTTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGTTGATGGCCTACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGTGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCCGACCCCTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTGAACGGCACGCGCCCGCTGCTGGTGGAGGTGCAAGCGCTGGTGGCCCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTACTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGTGACTTGTTCGTCAACGTGGCGGGCGGCATGCAACTCACCGAGCCCGCGTGTGACCTCGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGTCCGCTGGATCCGAAGACGCTGGTGCTCGGCGAAGTGGGCCTCGCGGGAGAGGTG
CGCGCCGTGGGCCAGGTGGAGCCGCGGCTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCGGGCAG
TGCGCGGCGGCTCGAAGACGCCGGTCCAAAGATGAAGATTGTCGGCGTGGAGACGCTCGGCGACGCGCTCGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(80-219)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

52.193

100

0.523
  radA Streptococcus pneumoniae Rx1

51.868

100

0.519
  radA Streptococcus pneumoniae D39

51.868

100

0.519
  radA Streptococcus pneumoniae R6

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.868

100

0.519
  radA Streptococcus mitis NCTC 12261

51.648

100

0.516

Multiple sequence alignment