Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   CCZ24_RS08570 Genome accession   NZ_CP021773
Coordinates   1697697..1698731 (-) Length   344 a.a.
NCBI ID   WP_000732710.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692697..1703731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS08535 (CCZ24_08385) - 1693449..1693751 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  CCZ24_RS08540 (CCZ24_08390) - 1693744..1694040 (-) 297 WP_001140526.1 YlxR family protein -
  CCZ24_RS08545 (CCZ24_08395) nusA 1694062..1695213 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  CCZ24_RS08550 (CCZ24_08400) rimP 1695249..1695725 (-) 477 WP_041971671.1 ribosome maturation factor RimP -
  CCZ24_RS08560 (CCZ24_08410) trmB 1696214..1696849 (-) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CCZ24_RS08565 (CCZ24_08415) - 1696839..1697639 (-) 801 WP_000155920.1 phosphotransferase family protein -
  CCZ24_RS08570 (CCZ24_08420) pptB 1697697..1698731 (-) 1035 WP_000732710.1 ABC transporter permease Regulator
  CCZ24_RS08575 (CCZ24_08425) pptA 1698733..1699458 (-) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  CCZ24_RS08580 (CCZ24_08430) - 1699530..1699716 (+) 187 Protein_1624 hypothetical protein -
  CCZ24_RS08585 (CCZ24_08435) - 1699768..1700271 (-) 504 WP_000773459.1 hypothetical protein -
  CCZ24_RS08590 (CCZ24_08440) - 1700607..1701026 (+) 420 WP_000368099.1 HIT family protein -
  CCZ24_RS08595 (CCZ24_08445) - 1701023..1701319 (+) 297 WP_000690175.1 hypothetical protein -
  CCZ24_RS08600 (CCZ24_08450) - 1701383..1702690 (-) 1308 WP_000708161.1 LCP family protein -
  CCZ24_RS08605 (CCZ24_08455) - 1702699..1703220 (-) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  CCZ24_RS08610 (CCZ24_08460) tsaE 1703213..1703656 (-) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40316.74 Da        Isoelectric Point: 10.4543

>NTDB_id=196241 CCZ24_RS08570 WP_000732710.1 1697697..1698731(-) (pptB) [Streptococcus agalactiae strain B105]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGEIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVVQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQAILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=196241 CCZ24_RS08570 WP_000732710.1 1697697..1698731(-) (pptB) [Streptococcus agalactiae strain B105]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGAAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTGTTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGGCTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACCATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTGTTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.965

100

0.48
  pptB Streptococcus thermophilus LMD-9

47.674

100

0.477