Detailed information NTG0196130

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CDH81_RS06985
• Genome accession: NZ_CP021772
• Coordinates: 1375513..1376622 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain B111
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1370513..1381622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDH81_RS06960 (CDH81_06880)	-	1370885..1371724 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
CDH81_RS06965 (CDH81_06885)	pgsA	1371724..1372266 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
CDH81_RS06970 (CDH81_06890)	-	1372389..1373672 (-)	1284	WP_000217762.1	pitrilysin family protein	-
CDH81_RS06975 (CDH81_06895)	-	1373674..1374918 (-)	1245	WP_000706188.1	pitrilysin family protein	-
CDH81_RS06980 (CDH81_06900)	yaaA	1375157..1375510 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
CDH81_RS06985 (CDH81_06905)	recF	1375513..1376622 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
CDH81_RS06990 (CDH81_06910)	-	1376634..1377500 (-)	867	WP_000398683.1	GRP family sugar transporter	-
CDH81_RS06995 (CDH81_06915)	-	1377556..1378218 (-)	663	WP_001873330.1	helix-turn-helix transcriptional regulator	-
CDH81_RS07000 (CDH81_06920)	guaB	1378293..1379774 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
CDH81_RS07005 (CDH81_06925)	-	1379931..1380416 (-)	486	WP_001034427.1	arginine repressor	-
CDH81_RS07010 (CDH81_06930)	-	1380426..1381106 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=196130 CDH81_RS06985 WP_000264870.1 1375513..1376622(+) (recF) [Streptococcus agalactiae strain B111]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=196130 CDH81_RS06985 WP_000264870.1 1375513..1376622(+) (recF) [Streptococcus agalactiae strain B111]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447