Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CDC45_RS13860 Genome accession   NZ_CP021762
Coordinates   2915543..2917735 (-) Length   730 a.a.
NCBI ID   WP_043876653.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS 476     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2910543..2922735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC45_RS26870 (CDC45_13780) - 2910731..2910912 (+) 182 Protein_2719 transposase -
  CDC45_RS13840 (CDC45_13790) - 2912198..2913055 (-) 858 Protein_2721 LysR family transcriptional regulator -
  CDC45_RS13845 (CDC45_13795) - 2913197..2914327 (+) 1131 WP_011002616.1 DSD1 family PLP-dependent enzyme -
  CDC45_RS26290 - 2914472..2914645 (+) 174 WP_162903483.1 hypothetical protein -
  CDC45_RS13850 (CDC45_13800) - 2914869..2915309 (+) 441 WP_011002617.1 hypothetical protein -
  CDC45_RS13855 (CDC45_13805) - 2915321..2915524 (+) 204 WP_016723714.1 GDCCVxC domain-containing (seleno)protein -
  CDC45_RS13860 (CDC45_13810) recG 2915543..2917735 (-) 2193 WP_043876653.1 ATP-dependent DNA helicase RecG Machinery gene
  CDC45_RS13865 (CDC45_13815) queA 2917812..2918900 (+) 1089 WP_011002619.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CDC45_RS13870 (CDC45_13820) tgt 2918894..2920045 (+) 1152 WP_011002620.1 tRNA guanosine(34) transglycosylase Tgt -
  CDC45_RS13875 (CDC45_13825) yajC 2920157..2920486 (+) 330 WP_011002621.1 preprotein translocase subunit YajC -
  CDC45_RS13880 (CDC45_13830) secD 2920608..2922488 (+) 1881 WP_011002622.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79201.28 Da        Isoelectric Point: 9.5031

>NTDB_id=195731 CDC45_RS13860 WP_043876653.1 2915543..2917735(-) (recG) [Ralstonia pseudosolanacearum strain RS 476]
MPARARSATAAVPAPDADTAPAAGPRRAPAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLTGAQARVWEEIRADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPVAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=195731 CDC45_RS13860 WP_043876653.1 2915543..2917735(-) (recG) [Ralstonia pseudosolanacearum strain RS 476]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATGCCGACACGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCCCGCGGCGAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCTCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTATGAGGACGAAACCGCGCTGCTGACCATCGCCGAGGCCGTC
GCCCGCGCCAATACCGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCCCGCCGGCA
ACTGGTGGTGCACATCGCCGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAACTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGTGCGCGCCTGCGCGTGCGCGGCGAGGTGCGCGGCGGCTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGACGCCGGACGAGCCGCTGCCCGACCGCCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAACGCGCTCGGCCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCGCGGGCCGC
TGGCGCCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGCTGCACCAGCCCACGCCCGACGTGGATGAGCACAGC
CTGGTCGAACGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAACTGTCGCTCAAGCGCGC
CCAGGCTGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGGCTGCTCGCGCGCTTCCTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCCGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCCGGCAGCCTCAAGCGCAAGCAGAAGGACGAGGCCGCTGCGCGCGTGGCCGCCGGC
ACCGCGCAACTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACTTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
CGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGACACGCCCGTCGCCGAGA
CCGCGCAGTTGGTGCCGCACCAGCTGATGATGTCGGCCACGCCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGCCCCCTGATCGAAGAGAGCG
AGGCGTTGCAGCTGCAGACTGCCGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAACTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCGCCCCTGTCG
CCGACGGCCAAACAGCGCTTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGATATCCG
CGGCCCTGGCGAATTCCTCGGCGCGCGGCAATCGGGCGAGGCCATGCTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGACGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(515-625)

RecG wedge domain (RecG_wedge)

(47-194)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)

DEAD/DEAH box helicase (DEAD)

(320-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

58.285

94.247

0.549
  recG/mmsA Streptococcus pneumoniae R6

41.203

91.096

0.375
  recG/mmsA Streptococcus pneumoniae R36A

41.203

91.096

0.375