Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BS16045_RS16860 Genome accession   NZ_CP017112
Coordinates   3199598..3200242 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3194598..3205242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS16825 (BS16045_03330) mrpB 3195790..3196221 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BS16045_RS16830 (BS16045_03331) mrpC 3196221..3196562 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BS16045_RS16835 (BS16045_03332) mrpD 3196555..3198036 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  BS16045_RS16840 (BS16045_03333) mrpE 3198042..3198518 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BS16045_RS16845 (BS16045_03334) mrpF 3198518..3198802 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BS16045_RS16850 (BS16045_03335) mnhG 3198786..3199160 (+) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  BS16045_RS16855 (BS16045_03336) yuxO 3199199..3199579 (-) 381 WP_069322860.1 hotdog fold thioesterase -
  BS16045_RS16860 (BS16045_03337) comA 3199598..3200242 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BS16045_RS16865 (BS16045_03338) comP 3200323..3202620 (-) 2298 WP_033884760.1 histidine kinase Regulator
  BS16045_RS16870 (BS16045_03339) comX 3202628..3202789 (-) 162 WP_003228803.1 competence pheromone ComX -
  BS16045_RS16875 (BS16045_03340) - 3202804..3203664 (-) 861 WP_069322861.1 polyprenyl synthetase family protein -
  BS16045_RS16880 (BS16045_03341) degQ 3203849..3203989 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BS16045_RS22490 - 3204211..3204336 (+) 126 WP_003228793.1 hypothetical protein -
  BS16045_RS16885 (BS16045_03342) - 3204450..3204818 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=195721 BS16045_RS16860 WP_003220716.1 3199598..3200242(-) (comA) [Bacillus subtilis strain BS16045]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=195721 BS16045_RS16860 WP_003220716.1 3199598..3200242(-) (comA) [Bacillus subtilis strain BS16045]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment