Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A7J08_RS10290 Genome accession   NZ_CP017088
Coordinates   2062048..2062812 (+) Length   254 a.a.
NCBI ID   WP_024400054.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2057048..2067812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS10250 (A7J08_09995) - 2057402..2057740 (+) 339 WP_029186211.1 DUF771 domain-containing protein -
  A7J08_RS10255 (A7J08_10000) - 2057803..2058924 (+) 1122 WP_053867305.1 site-specific integrase -
  A7J08_RS10275 (A7J08_10020) - 2059430..2060113 (-) 684 WP_053867304.1 YoaK family protein -
  A7J08_RS10280 (A7J08_10025) rlmH 2060138..2060617 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A7J08_RS10285 (A7J08_10030) htrA 2060791..2061987 (+) 1197 WP_053867303.1 trypsin-like peptidase domain-containing protein Regulator
  A7J08_RS10290 (A7J08_10035) spo0J 2062048..2062812 (+) 765 WP_024400054.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29042.35 Da        Isoelectric Point: 9.4317

>NTDB_id=195423 A7J08_RS10290 WP_024400054.1 2062048..2062812(+) (spo0J) [Streptococcus suis strain SRD478]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSYQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKILKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=195423 A7J08_RS10290 WP_024400054.1 2062048..2062812(+) (spo0J) [Streptococcus suis strain SRD478]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTACGCCTACTAAATCTATCATATCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACCAAGCTTAAACAACGTGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTCTCAAGAAGAAAAACGGGAGTGGAGAAATTCGAATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547

Multiple sequence alignment