Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CCD89_RS04905 Genome accession   NZ_CP021723
Coordinates   825870..826547 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain 13-600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820870..831547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD89_RS04890 (CCD89_04895) hflX 822456..823634 (-) 1179 WP_002219225.1 GTPase HflX -
  CCD89_RS04895 (CCD89_04900) - 823639..824919 (-) 1281 WP_002229406.1 CAP domain-containing protein -
  CCD89_RS12835 - 824921..825049 (+) 129 WP_009347251.1 hypothetical protein -
  CCD89_RS04900 (CCD89_04905) - 825072..825797 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  CCD89_RS04905 (CCD89_04910) ysxA/radC 825870..826547 (-) 678 WP_002222553.1 DNA repair protein RadC Machinery gene
  CCD89_RS12840 - 826574..826696 (+) 123 WP_255294323.1 hypothetical protein -
  CCD89_RS04910 (CCD89_04915) gshA 826670..828019 (-) 1350 WP_002229416.1 glutamate--cysteine ligase -
  CCD89_RS04915 (CCD89_04920) leuC 828279..829688 (+) 1410 WP_002229418.1 3-isopropylmalate dehydratase large subunit -
  CCD89_RS04920 (CCD89_04925) - 829785..830039 (+) 255 WP_002213442.1 hypothetical protein -
  CCD89_RS04925 (CCD89_04930) leuD 830101..830742 (+) 642 WP_002217111.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=195260 CCD89_RS04905 WP_002222553.1 825870..826547(-) (ysxA/radC) [Neisseria meningitidis strain 13-600]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=195260 CCD89_RS04905 WP_002222553.1 825870..826547(-) (ysxA/radC) [Neisseria meningitidis strain 13-600]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378