Detailed information NTG0195239

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: BG030_RS07470
• Genome accession: NZ_CP017073
• Coordinates: 1629444..1631660 (+)
• Length: 738 a.a.
• NCBI ID: WP_012271147.1
• Uniprot ID: A0A7Y3XTC5
• Organism: Pseudomonas putida strain PP112420
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1624444..1636660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BG030_RS07450 (BG030_07325)	-	1626314..1626937 (+)	624	WP_012271143.1	glutathione S-transferase	-
BG030_RS07455 (BG030_07330)	-	1627071..1628003 (+)	933	WP_012271144.1	ABC transporter ATP-binding protein	-
BG030_RS07460 (BG030_07335)	-	1628000..1628779 (+)	780	WP_012271145.1	ABC transporter permease	-
BG030_RS07465 (BG030_07340)	-	1628663..1629301 (-)	639	WP_012271146.1	DUF2062 domain-containing protein	-
BG030_RS07470 (BG030_07345)	comA	1629444..1631660 (+)	2217	WP_012271147.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
BG030_RS07475 (BG030_07350)	exbB	1631729..1632364 (+)	636	WP_016391244.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
BG030_RS07480 (BG030_07355)	-	1632361..1632795 (+)	435	WP_012271149.1	ExbD/TolR family protein	-
BG030_RS07485 (BG030_07360)	lpxK	1632795..1633796 (+)	1002	WP_012271150.1	tetraacyldisaccharide 4'-kinase	-
BG030_RS07490 (BG030_07365)	-	1633841..1634026 (+)	186	WP_003247142.1	Trm112 family protein	-
BG030_RS07495 (BG030_07370)	kdsB	1634023..1634787 (+)	765	WP_012271151.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
BG030_RS07500 (BG030_07375)	-	1634787..1635251 (+)	465	WP_012271152.1	low molecular weight protein-tyrosine-phosphatase	-
BG030_RS07505 (BG030_07380)	murB	1635248..1636267 (+)	1020	WP_012271153.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 79797.67 Da
• Isoelectric Point: 9.2217

>NTDB_id=195239 BG030_RS07470 WP_012271147.1 1629444..1631660(+) (comA) [Pseudomonas putida strain PP112420]
MRTGMFALALGLLCLGFLPALPSVGWLLVLAGCAVVSLFTRGWPLGCFLLGFCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPTRTAQGVRFELEAARSRRAELPQRLQLSWFEGPTLRAGEQWRLAVTLQRPAGLLNPHGPDREAYLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGREQALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAVLARWGLWPARLPWLPWACGLAMTAALGYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSARLGAWRPWQAWTRAQWVVAIGLLPVLLATGLPVSLTAPLANLVAVPWISLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDWLFRLLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRALGAVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTQHHNLLYDAGPARGESDLGERVVLPTLHKLGVASLDLMVISHAHADHAGGAG
AIQRGLPVKRVVGGEALEHFELQPCVSGEQWEWDGVRFSLWHWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEVPGIDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGAVMHDTAVEGALRVVLGRHG
EAEGVRVQRRFWREVAIP

Nucleotide

• Length: 2217 bp

>NTDB_id=195239 BG030_RS07470 WP_012271147.1 1629444..1631660(+) (comA) [Pseudomonas putida strain PP112420]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTTTTGTGCCTGGGCTTTCTCCCCGCGTTGCCATCGGTCGGATGGCT
GCTGGTGCTGGCCGGCTGCGCTGTCGTCAGCCTGTTTACCCGGGGTTGGCCGTTGGGCTGTTTTCTCCTGGGCTTCTGTT
GGGCTTGCTGGTCTGCGCAGCAGGCGCTCGATGATCGCCTGGCTAGCGGTCTGGATGGCCGCACCCTGTGGCTGGAAGGG
CGGGTGGTTGGTTTGCCGACCCGAACAGCACAAGGCGTGCGTTTCGAGTTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAGCGCCTGCAATTGAGCTGGTTCGAAGGGCCGACACTGAGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGTCCGGCTGGGCTGCTCAATCCGCATGGGCCGGACCGGGAGGCCTATTTGCTGGCGCGGCGAGTGGGCGCCACGGGC
ACGGTCAAGGCGGGGCAGCTGCTGGCTCCCGTGACCGGTGGCTGGCGCGATGCGCTGCGTCAGCGCTTGCTTGCGGTCGA
GGCCAATGGTCGTGAGCAAGCGTTGGTGGCGTTGGTGCTGGGCGATGGAGCGGGCCTGGCCAGGGAGGACTGGCAGACAT
TGCAGGCCACCGGCACGGTGCACCTGTTGGTAATTTCTGGCCAGCATATCGGCCTGGTCGCCGGTTTGCTCTACGGCCTG
GTTGCCGTGCTGGCGCGTTGGGGGCTGTGGCCGGCACGGCTGCCATGGCTACCCTGGGCCTGCGGTCTGGCCATGACCGC
GGCGCTGGGCTACGGCTGGTTGGCCGGCGGCGGTGTGCCCGTGCAGCGCGCCTGCCTGATGCTGGCTGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTTGGGGCTTTTTTACCCTTGTTGCTGGCGCTCGTTGCGGTGTTGCTGGTTGAGCCGCTG
GCGGCGCTGCTTCCTGGGTTCTGGCTGTCGTTTGCTGCCGTGGCCACGCTGATCTATTGCTTCAGTGCTCGCTTGGGCGC
TTGGCGGCCCTGGCAGGCTTGGACGCGTGCGCAATGGGTTGTTGCCATCGGCTTGCTACCGGTACTGCTGGCTACAGGCT
TGCCGGTAAGCCTGACTGCACCGCTGGCCAACCTTGTGGCAGTGCCGTGGATCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGTTGCTGCCGCTGGGCGGCGTAGGGGAGGCGCTGTTGTGGCTGGCGGGCGGCTTGCTGGATTGGCTGTT
CCGGCTGCTGGCACTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCTTGCCACTGTGGGCCTGGCTGTTGGTCT
GTCTGGGTGCGTTGTTGGTTTTGCTACCCCGCGGTGTGCCGCTGCGCGCGTTGGGAGCGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGGCAAGTCGAGGTCTGGCAGCTGGACGTTGGCCAGGGGCTGGCGGTGCTGTTGCG
TACCCAGCATCACAACCTGTTGTATGACGCCGGGCCGGCCAGGGGCGAAAGTGACCTGGGGGAGCGGGTGGTACTGCCGA
CTTTGCATAAGCTGGGGGTGGCCAGCCTAGACCTGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGTGGGGCGGGG
GCCATTCAGCGGGGTTTGCCGGTCAAGCGGGTTGTCGGTGGTGAAGCGCTGGAACACTTTGAGCTGCAGCCTTGTGTGAG
TGGTGAACAGTGGGAATGGGACGGCGTGCGCTTTTCGCTGTGGCACTGGGCTGATGGGCAGAGCAGCAACGACCGCTCCT
GCGTGCTGCTGGTCGAGGCCCAGGGCGAGCGATTGTTGTTGGCTGGTGATATGGAGGCTGGCGCCGAACGGGCCTGGCTG
GCAGCCACTGAAGTGCCCGGAATCGACTGGCTGCAGGCTCCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGTGCTACCGCACCGCGTGGGGTTTTGGTTTCGCGTGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTCGTGG
AGCGGTATCGGCGGCACGGGGCGGTGATGCATGACACGGCGGTGGAGGGGGCGTTGCGGGTGGTGCTGGGGCGGCACGGG
GAAGCGGAAGGTGTGCGGGTGCAGCGGCGATTCTGGCGTGAGGTCGCAATTCCCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

3D structure

• AlphaFold DB: A0A7Y3XTC5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.249	97.425	0.577
comA	Ralstonia pseudosolanacearum GMI1000	37.013	100	0.386