Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BGM23_RS05905 Genome accession   NZ_CP017072
Coordinates   1145830..1146474 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140830..1151474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS05880 (BGM23_05880) - 1141181..1141549 (-) 369 WP_014477834.1 hypothetical protein -
  BGM23_RS21755 - 1141663..1141788 (-) 126 WP_003228793.1 hypothetical protein -
  BGM23_RS05885 (BGM23_05885) degQ 1142010..1142150 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BGM23_RS05890 (BGM23_05890) - 1142335..1143198 (+) 864 WP_032722437.1 polyprenyl synthetase family protein -
  BGM23_RS05895 (BGM23_05895) comX 1143200..1143421 (+) 222 WP_014480704.1 competence pheromone ComX -
  BGM23_RS05900 (BGM23_05900) comP 1143437..1145749 (+) 2313 WP_032722435.1 histidine kinase Regulator
  BGM23_RS05905 (BGM23_05905) comA 1145830..1146474 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BGM23_RS05910 (BGM23_05910) - 1146493..1146873 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  BGM23_RS05915 (BGM23_05915) mnhG 1146912..1147286 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  BGM23_RS05920 (BGM23_05920) - 1147270..1147554 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BGM23_RS05925 (BGM23_05925) - 1147554..1148030 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BGM23_RS05930 (BGM23_05930) - 1148036..1149517 (-) 1482 WP_046663921.1 Na+/H+ antiporter subunit D -
  BGM23_RS05935 (BGM23_05935) - 1149510..1149851 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BGM23_RS05940 (BGM23_05940) - 1149851..1150282 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=195169 BGM23_RS05905 WP_003220716.1 1145830..1146474(+) (comA) [Bacillus sp. FJAT-14266]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=195169 BGM23_RS05905 WP_003220716.1 1145830..1146474(+) (comA) [Bacillus sp. FJAT-14266]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment