Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CCZ36_RS09065 Genome accession   NZ_CP021707
Coordinates   1997968..1999059 (-) Length   363 a.a.
NCBI ID   WP_069736618.1    Uniprot ID   A0ABQ2SL34
Organism   Streptomyces sp. S063     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1992968..2004059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS09055 rcrP 1994291..1996024 (+) 1734 WP_069736620.1 ABC transporter ATP-binding protein Regulator
  CCZ36_RS09060 - 1996024..1997952 (+) 1929 WP_069736619.1 ABC transporter ATP-binding protein -
  CCZ36_RS09065 rpoS 1997968..1999059 (-) 1092 WP_069736618.1 RNA polymerase sigma factor Regulator
  CCZ36_RS09070 dnaG 1999265..2001190 (-) 1926 WP_069736617.1 DNA primase -
  CCZ36_RS09075 - 2001284..2002543 (-) 1260 WP_069736616.1 FAD-dependent oxidoreductase -
  CCZ36_RS09080 - 2002682..2004031 (-) 1350 WP_069736615.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40602.35 Da        Isoelectric Point: 6.4131

>NTDB_id=195095 CCZ36_RS09065 WP_069736618.1 1997968..1999059(-) (rpoS) [Streptomyces sp. S063]
MQTRTVTTTTAPMAAIPAQNRALRHPETAAGPPGHAPEAVMVEATHLPEPPDPRNRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAVDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=195095 CCZ36_RS09065 WP_069736618.1 1997968..1999059(-) (rpoS) [Streptomyces sp. S063]
GTGCAGACCCGGACCGTGACGACCACGACCGCGCCCATGGCGGCCATCCCCGCGCAGAACAGGGCCCTGCGCCATCCGGA
GACCGCAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCACCTCCCCGAACCGCCGGACCCCA
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTGGAGGCCGGACTCTTCGCGGAGGAACGCCTCGCCGGCACCCCGGA
CCTCGACTCCCGCCTCGCCGTGGACCTGGACCGGCTGGTGGTGATGGGCCGCACCGCCAAACGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTCCAGGAGGGGAAC
CTCGGCCTGATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAGCTGATCAACCGCG
TGGTCCGCGTCCAGCGCCGCCTCCTCCAGGAGCGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGTCGAACTGGACCTG
ACGCCCGAGCGGGTCACCGAGGTCCTCCGCCTGGCCCAGGAACCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCCAGC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTGCAACTGCGCTACGGCCTGGACGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGACGCATCTTCGGCGTGACACGCGAACGTATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)

Sigma-70 region 2 (Sigma70_r2)

(130-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.21

95.592

0.394