Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CCZ36_RS09055 Genome accession   NZ_CP021707
Coordinates   1994291..1996024 (+) Length   577 a.a.
NCBI ID   WP_069736620.1    Uniprot ID   -
Organism   Streptomyces sp. S063     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1989291..2001024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS09020 - 1990580..1991026 (-) 447 WP_128817415.1 hypothetical protein -
  CCZ36_RS09025 - 1991023..1991286 (-) 264 WP_033299579.1 hypothetical protein -
  CCZ36_RS09045 - 1992218..1992523 (+) 306 WP_003969335.1 hypothetical protein -
  CCZ36_RS09050 - 1992583..1994034 (+) 1452 WP_128817416.1 FGGY family carbohydrate kinase -
  CCZ36_RS09055 rcrP 1994291..1996024 (+) 1734 WP_069736620.1 ABC transporter ATP-binding protein Regulator
  CCZ36_RS09060 - 1996024..1997952 (+) 1929 WP_069736619.1 ABC transporter ATP-binding protein -
  CCZ36_RS09065 rpoS 1997968..1999059 (-) 1092 WP_069736618.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62266.39 Da        Isoelectric Point: 5.3777

>NTDB_id=195094 CCZ36_RS09055 WP_069736620.1 1994291..1996024(+) (rcrP) [Streptomyces sp. S063]
MLIKLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRRMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVAALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVATIRDADRILVLDEGRLVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=195094 CCZ36_RS09055 WP_069736620.1 1994291..1996024(+) (rcrP) [Streptomyces sp. S063]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGTCTGAACGCCGACATCATTGACAACGGTGTCGTCACGGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGTGTCCTCCAGGTGCTCTGCAATGTGGGGGCCGTCTTCTACGGGGCG
CGTACCGCCTCCGCCCTCGGGCGGGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTGGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CACTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGGGTCTCCGTCGGCCTCATCGTGCGGAGGATGGGACCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTCCTCGGGACCGAATCGAGTGTCGTGCCG
CCCGTCGCGCCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTATCCGGGGGCGGA
GGAGCCGGTGCTGCGGAACGTCGATCTGGTGGCCCGGCCCGGCGAGACCACCGCGGTCATCGGGTCGACCGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTACGG
ACGCTGGATCCGGCGCTGCTGGCGAGAACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAAGAGCTGTGGCACGCGTTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGCCGCGCTGGAGCACGGGCTCGACGCGCCGATCGCCCAGGGCGGCACCAATGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGGGCGGCCCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGCACCGGAACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.28

100

0.397