Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BGL52_RS00045 | Genome accession | NZ_CP017065 |
| Coordinates | 10474..11067 (+) | Length | 197 a.a. |
| NCBI ID | WP_010490295.1 | Uniprot ID | A0AAN1C5F0 |
| Organism | Lacticaseibacillus casei strain LC5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5474..16067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BGL52_RS00030 (BGL52_00030) | gyrA | 6785..9409 (+) | 2625 | WP_087911227.1 | DNA gyrase subunit A | - |
| BGL52_RS00035 (BGL52_00035) | ssb | 9590..10021 (+) | 432 | WP_087911228.1 | single-stranded DNA-binding protein | - |
| BGL52_RS00040 (BGL52_00040) | rpsF | 10148..10444 (+) | 297 | WP_010490297.1 | 30S ribosomal protein S6 | - |
| BGL52_RS00045 (BGL52_00045) | ssb | 10474..11067 (+) | 594 | WP_010490295.1 | single-stranded DNA-binding protein | Machinery gene |
| BGL52_RS00050 (BGL52_00050) | rpsR | 11157..11393 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| BGL52_RS00055 (BGL52_00055) | - | 11473..11979 (-) | 507 | WP_025013654.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| BGL52_RS00060 (BGL52_00060) | - | 12337..13815 (+) | 1479 | WP_087911229.1 | cytochrome ubiquinol oxidase subunit I | - |
| BGL52_RS00065 (BGL52_00065) | cydB | 13808..14827 (+) | 1020 | WP_010490252.1 | cytochrome d ubiquinol oxidase subunit II | - |
| BGL52_RS00075 (BGL52_00070) | - | 15060..15254 (+) | 195 | WP_010490250.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21090.81 Da Isoelectric Point: 4.9056
>NTDB_id=195007 BGL52_RS00045 WP_010490295.1 10474..11067(+) (ssb) [Lacticaseibacillus casei strain LC5]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 594 bp
>NTDB_id=195007 BGL52_RS00045 WP_010490295.1 10474..11067(+) (ssb) [Lacticaseibacillus casei strain LC5]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCGGCAGGTCAAAGCCAAGGCAACAATGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCGGCAGGTCAAAGCCAAGGCAACAATGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.406 |
100 |
0.604 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.5 |
100 |
0.492 |