Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM437_RS21305 Genome accession   NZ_CP021689
Coordinates   4055588..4056064 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4050588..4061064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM437_RS21265 (AM437_21225) - 4050789..4052402 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  AM437_RS21270 (AM437_21230) tnpB 4052433..4052783 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  AM437_RS21275 (AM437_21235) - 4052780..4053205 (-) 426 WP_000422741.1 transposase -
  AM437_RS21280 (AM437_21240) - 4053311..4053721 (+) 411 WP_000846703.1 hypothetical protein -
  AM437_RS21290 (AM437_21250) - 4053942..4054760 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  AM437_RS21295 (AM437_21255) - 4054760..4055005 (+) 246 WP_001164966.1 hypothetical protein -
  AM437_RS21300 (AM437_21260) - 4055099..4055572 (+) 474 WP_001542276.1 antirestriction protein -
  AM437_RS21305 (AM437_21265) radC 4055588..4056064 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  AM437_RS21310 (AM437_21270) yeeT 4056127..4056348 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM437_RS21315 (AM437_21275) - 4056367..4057011 (+) 645 WP_000086752.1 hypothetical protein -
  AM437_RS21320 (AM437_21280) cbeA 4057027..4057395 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM437_RS21325 (AM437_21285) cbtA 4057484..4057858 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM437_RS21330 (AM437_21290) yeeW 4057855..4058049 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM437_RS27050 - 4058095..4058175 (+) 81 Protein_3940 hypothetical protein -
  AM437_RS27920 (AM437_21300) - 4058664..4058846 (+) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  AM437_RS21345 (AM437_21305) tmaR 4058947..4059276 (-) 330 WP_000450409.1 DUF496 family protein -
  AM437_RS21350 (AM437_21310) yeeA 4059448..4060506 (-) 1059 WP_001200889.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=194978 AM437_RS21305 WP_001186200.1 4055588..4056064(+) (radC) [Escherichia coli strain AR_0058]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=194978 AM437_RS21305 WP_001186200.1 4055588..4056064(+) (radC) [Escherichia coli strain AR_0058]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment