Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   S100027_RS10530 Genome accession   NZ_CP021677
Coordinates   2028236..2028607 (+) Length   123 a.a.
NCBI ID   WP_009328223.1    Uniprot ID   Q65J33
Organism   Bacillus licheniformis strain SRCM100027     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2023236..2033607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS10500 (S100027_02118) - 2023664..2023897 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  S100027_RS10505 (S100027_02119) recP/tkt 2024064..2026067 (+) 2004 WP_009328229.1 transketolase Machinery gene
  S100027_RS10510 (S100027_02120) sirA 2026222..2026659 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  S100027_RS10515 (S100027_02121) - 2026744..2026962 (+) 219 WP_003182236.1 YneF family protein -
  S100027_RS10520 (S100027_02122) - 2027043..2027204 (-) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  S100027_RS10525 (S100027_02123) - 2027447..2028154 (+) 708 WP_011198008.1 cytochrome c biogenesis protein CcdA -
  S100027_RS10530 (S100027_02124) spo0A 2028236..2028607 (+) 372 WP_009328223.1 response regulator Regulator
  S100027_RS10535 (S100027_02125) - 2028681..2029175 (+) 495 WP_085959522.1 CcdC family protein -
  S100027_RS10540 (S100027_02126) - 2029211..2029639 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  S100027_RS10545 (S100027_02127) - 2029844..2030251 (-) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  S100027_RS10550 - 2030387..2030533 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  S100027_RS10555 sspO 2030575..2030721 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13854.31 Da        Isoelectric Point: 4.5739

>NTDB_id=194760 S100027_RS10530 WP_009328223.1 2028236..2028607(+) (spo0A) [Bacillus licheniformis strain SRCM100027]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKRIVVEAIEAGAKDFIVKPFEETKVVEAIRHVLGNACS

Nucleotide


Download         Length: 372 bp        

>NTDB_id=194760 S100027_RS10530 WP_009328223.1 2028236..2028607(+) (spo0A) [Bacillus licheniformis strain SRCM100027]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGCGGATCGTCGTTGAGGCGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65J33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

37.097

100

0.374
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366