Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MTVDSCj13_RS07540 Genome accession   NZ_CP017032
Coordinates   1455413..1455724 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj13     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450413..1460724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj13_RS07520 (MTVDSCj13_1471) ctsE 1451282..1452841 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  MTVDSCj13_RS07525 (MTVDSCj13_1472) ctsX 1452831..1453418 (-) 588 WP_032586877.1 transformation system protein Machinery gene
  MTVDSCj13_RS07530 (MTVDSCj13_1473) ctsP 1453422..1454030 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MTVDSCj13_RS07535 (MTVDSCj13_1474) ctsD 1454023..1455435 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCj13_RS07540 (MTVDSCj13_1475) ctsR 1455413..1455724 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  MTVDSCj13_RS07545 (MTVDSCj13_1476) nifJ 1455748..1459308 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MTVDSCj13_RS07550 (MTVDSCj13_1477) - 1459401..1460042 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=194693 MTVDSCj13_RS07540 WP_002862131.1 1455413..1455724(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=194693 MTVDSCj13_RS07540 WP_002862131.1 1455413..1455724(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment