Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   MTVDSCj13_RS07520 Genome accession   NZ_CP017032
Coordinates   1451282..1452841 (-) Length   519 a.a.
NCBI ID   WP_032586875.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj13     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446282..1457841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj13_RS07495 (MTVDSCj13_1466) - 1446292..1446726 (+) 435 WP_032586868.1 flagellar protein FlgN -
  MTVDSCj13_RS07500 (MTVDSCj13_1467) flgK 1446736..1448562 (+) 1827 WP_032586871.1 flagellar hook-associated protein FlgK -
  MTVDSCj13_RS07505 (MTVDSCj13_1468) - 1448579..1449343 (+) 765 WP_002851318.1 TIGR02757 family protein -
  MTVDSCj13_RS07510 (MTVDSCj13_1469) - 1449347..1450111 (+) 765 WP_002860344.1 TSUP family transporter -
  MTVDSCj13_RS07515 (MTVDSCj13_1470) ctsF 1450104..1451285 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  MTVDSCj13_RS07520 (MTVDSCj13_1471) ctsE 1451282..1452841 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  MTVDSCj13_RS07525 (MTVDSCj13_1472) ctsX 1452831..1453418 (-) 588 WP_032586877.1 transformation system protein Machinery gene
  MTVDSCj13_RS07530 (MTVDSCj13_1473) ctsP 1453422..1454030 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MTVDSCj13_RS07535 (MTVDSCj13_1474) ctsD 1454023..1455435 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCj13_RS07540 (MTVDSCj13_1475) ctsR 1455413..1455724 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60109.91 Da        Isoelectric Point: 5.7035

>NTDB_id=194689 MTVDSCj13_RS07520 WP_032586875.1 1451282..1452841(-) (ctsE) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENQKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIVSAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=194689 MTVDSCj13_RS07520 WP_032586875.1 1451282..1452841(-) (ctsE) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGCCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAACGAGTTGAAAAGTATTGAAAAAAAGATTGTTTCCGCAGAAGATCCT
ATAGAGTATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.615

100

0.996

Multiple sequence alignment