Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   MTVDSCj13_RS03330 Genome accession   NZ_CP017032
Coordinates   639078..639515 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj13     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634078..644515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj13_RS09180 - 634571..634843 (+) 273 WP_250488238.1 hypothetical protein -
  MTVDSCj13_RS03310 (MTVDSCj13_0649) - 634891..636390 (+) 1500 WP_250488237.1 DUF4118 domain-containing protein -
  MTVDSCj13_RS03315 (MTVDSCj13_0650) uvrB 636492..638465 (-) 1974 WP_069360383.1 excinuclease ABC subunit UvrB -
  MTVDSCj13_RS03320 (MTVDSCj13_0651) - 638619..638849 (+) 231 WP_002852327.1 hypothetical protein -
  MTVDSCj13_RS03325 (MTVDSCj13_0652) - 638839..639081 (+) 243 WP_002854947.1 hypothetical protein -
  MTVDSCj13_RS03330 (MTVDSCj13_0653) Cj0683 639078..639515 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MTVDSCj13_RS03335 (MTVDSCj13_0654) priA 639497..641350 (+) 1854 WP_079354713.1 primosomal protein N' -
  MTVDSCj13_RS03340 (MTVDSCj13_0655) cipA 641360..642754 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  MTVDSCj13_RS03345 (MTVDSCj13_0656) ispG 642900..643973 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=194675 MTVDSCj13_RS03330 WP_002852324.1 639078..639515(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=194675 MTVDSCj13_RS03330 WP_002852324.1 639078..639515(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment