Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MTVDSCj07_RS07350 Genome accession   NZ_CP017031
Coordinates   1420389..1420700 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj07     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415389..1425700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj07_RS07330 (MTVDSCj07_1414) ctsE 1416258..1417816 (-) 1559 Protein_1408 GspE/PulE family protein -
  MTVDSCj07_RS07335 (MTVDSCj07_1415) ctsX 1417806..1418393 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MTVDSCj07_RS07340 (MTVDSCj07_1416) ctsP 1418397..1419005 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MTVDSCj07_RS07345 (MTVDSCj07_1417) mshL 1418998..1420411 (-) 1414 Protein_1411 pilus (MSHA type) biogenesis protein MshL -
  MTVDSCj07_RS07350 (MTVDSCj07_1418) ctsR 1420389..1420700 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  MTVDSCj07_RS07355 (MTVDSCj07_1419) nifJ 1420724..1424284 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MTVDSCj07_RS07360 (MTVDSCj07_1420) - 1424377..1425018 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=194666 MTVDSCj07_RS07350 WP_015016496.1 1420389..1420700(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=194666 MTVDSCj07_RS07350 WP_015016496.1 1420389..1420700(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment