Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   MTVDSCj07_RS07340 Genome accession   NZ_CP017031
Coordinates   1418397..1419005 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj07     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413397..1424005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj07_RS07315 (MTVDSCj07_1411) - 1413555..1414319 (+) 765 WP_002851318.1 TIGR02757 family protein -
  MTVDSCj07_RS07320 (MTVDSCj07_1412) - 1414323..1415087 (+) 765 WP_002851426.1 TSUP family transporter -
  MTVDSCj07_RS07325 (MTVDSCj07_1413) ctsF 1415080..1416261 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  MTVDSCj07_RS07330 (MTVDSCj07_1414) ctsE 1416258..1417816 (-) 1559 Protein_1408 GspE/PulE family protein -
  MTVDSCj07_RS07335 (MTVDSCj07_1415) ctsX 1417806..1418393 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MTVDSCj07_RS07340 (MTVDSCj07_1416) ctsP 1418397..1419005 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MTVDSCj07_RS07345 (MTVDSCj07_1417) mshL 1418998..1420411 (-) 1414 Protein_1411 pilus (MSHA type) biogenesis protein MshL -
  MTVDSCj07_RS07350 (MTVDSCj07_1418) ctsR 1420389..1420700 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=194665 MTVDSCj07_RS07340 WP_002851464.1 1418397..1419005(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=194665 MTVDSCj07_RS07340 WP_002851464.1 1418397..1419005(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment