Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CJ14980A_RS06820 Genome accession   NZ_CP017029
Coordinates   1333012..1333527 (-) Length   171 a.a.
NCBI ID   WP_002879014.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14980A     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1328012..1338527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ14980A_RS06805 (CJ14980A_1328) - 1328122..1329939 (-) 1818 WP_069176594.1 motility associated factor glycosyltransferase family protein -
  CJ14980A_RS06810 (CJ14980A_1329) - 1329936..1331759 (-) 1824 WP_069176595.1 motility associated factor glycosyltransferase family protein -
  CJ14980A_RS09850 - 1331769..1332431 (-) 663 WP_420480750.1 DUF2920 family protein -
  CJ14980A_RS09855 - 1332428..1333012 (-) 585 WP_374050562.1 DUF2920 family protein -
  CJ14980A_RS06820 (CJ14980A_1331) ctsG 1333012..1333527 (-) 516 WP_002879014.1 type II secretion system protein Machinery gene
  CJ14980A_RS06825 (CJ14980A_1332) tsaD 1333528..1334535 (-) 1008 WP_002879015.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CJ14980A_RS06830 (CJ14980A_1333) - 1334532..1335926 (-) 1395 WP_069176596.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CJ14980A_RS06835 (CJ14980A_1334) dxr 1335928..1336998 (-) 1071 WP_069176597.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CJ14980A_RS06840 (CJ14980A_1335) cdsA 1336995..1337720 (-) 726 WP_002866765.1 phosphatidate cytidylyltransferase -
  CJ14980A_RS06845 (CJ14980A_1336) - 1337729..1338067 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18742.65 Da        Isoelectric Point: 7.2441

>NTDB_id=194632 CJ14980A_RS06820 WP_002879014.1 1333012..1333527(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 14980A]
MRKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=194632 CJ14980A_RS06820 WP_002879014.1 1333012..1333527(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 14980A]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGATTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment