Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CJ14980A_RS02815 Genome accession   NZ_CP017029
Coordinates   532844..533494 (-) Length   216 a.a.
NCBI ID   WP_058000786.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14980A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 527844..538494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ14980A_RS02780 (CJ14980A_0542) - 528233..529237 (+) 1005 WP_079263945.1 hypothetical protein -
  CJ14980A_RS02785 (CJ14980A_0543) tlyA 529234..529995 (+) 762 WP_058000784.1 TlyA family RNA methyltransferase -
  CJ14980A_RS02790 (CJ14980A_0544) ribF 529961..530815 (+) 855 WP_052801763.1 bifunctional riboflavin kinase/FAD synthetase -
  CJ14980A_RS02795 (CJ14980A_0545) cmoA 530802..531512 (+) 711 WP_072223616.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CJ14980A_RS02800 (CJ14980A_0546) - 531502..531717 (-) 216 WP_058000785.1 EexN family lipoprotein -
  CJ14980A_RS02805 (CJ14980A_0547) - 531714..532142 (-) 429 WP_044261251.1 EexN family lipoprotein -
  CJ14980A_RS02810 (CJ14980A_0548) - 532201..532833 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  CJ14980A_RS02815 (CJ14980A_0549) CJE0566 532844..533494 (-) 651 WP_058000786.1 DNA/RNA non-specific endonuclease Regulator
  CJ14980A_RS02820 (CJ14980A_0550) nth 533491..534117 (-) 627 WP_002852225.1 endonuclease III -
  CJ14980A_RS02825 (CJ14980A_0551) peb4 534198..535019 (+) 822 WP_052794083.1 peptidylprolyl isomerase PEB4 -
  CJ14980A_RS02830 (CJ14980A_0552) fbaA 535019..536083 (+) 1065 WP_058000787.1 class II fructose-bisphosphate aldolase -
  CJ14980A_RS02835 (CJ14980A_0553) - 536178..537620 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.09 Da        Isoelectric Point: 9.5588

>NTDB_id=194622 CJ14980A_RS02815 WP_058000786.1 532844..533494(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain 14980A]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRATWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYIKIIKTSKFKECYQVPNHEVNDENIRQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=194622 CJ14980A_RS02815 WP_058000786.1 532844..533494(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain 14980A]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTGGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCGCTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATATAAAAATTATTAAAAC
TTCAAAATTTAAAGAATGTTATCAAGTGCCAAACCATGAAGTAAATGATGAAAATATTAGGCAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

71.066

91.204

0.648
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639

Multiple sequence alignment