Detailed information NTG0194566

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: BGI51_RS01545
• Genome accession: NZ_CP017024
• Coordinates: 319308..321548 (-)
• Length: 746 a.a.
• NCBI ID: WP_187980106.1
• Uniprot ID: -
• Organism: Pseudomonas oryzihabitans strain KNF2016
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 314308..326548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGI51_RS01510 (BGI51_01490)	murB	314736..315758 (-)	1023	WP_187980102.1	UDP-N-acetylmuramate dehydrogenase	-
BGI51_RS01515 (BGI51_01495)	-	315748..316215 (-)	468	WP_187981249.1	low molecular weight protein-tyrosine-phosphatase	-
BGI51_RS01520 (BGI51_01500)	kdsB	316222..316986 (-)	765	WP_187980103.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
BGI51_RS01525 (BGI51_01505)	-	316983..317168 (-)	186	WP_007162406.1	Trm112 family protein	-
BGI51_RS01530 (BGI51_01510)	lpxK	317183..318190 (-)	1008	WP_187980104.1	tetraacyldisaccharide 4'-kinase	-
BGI51_RS01535 (BGI51_01515)	-	318187..318627 (-)	441	WP_187980105.1	biopolymer transporter ExbD	-
BGI51_RS01540 (BGI51_01520)	exbB	318624..319259 (-)	636	WP_059315847.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
BGI51_RS01545 (BGI51_01525)	comA	319308..321548 (-)	2241	WP_187980106.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
BGI51_RS01550 (BGI51_01530)	-	321653..322894 (-)	1242	WP_187980107.1	lipoprotein-releasing ABC transporter permease subunit	-
BGI51_RS01555 (BGI51_01535)	lolD	322902..323603 (-)	702	WP_026083696.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
BGI51_RS01560 (BGI51_01540)	-	323596..324846 (-)	1251	WP_133862787.1	lipoprotein-releasing ABC transporter permease subunit	-
BGI51_RS01565 (BGI51_01545)	-	324954..325505 (+)	552	WP_133862788.1	PilZ domain-containing protein	-
BGI51_RS01570 (BGI51_01550)	-	325502..325792 (+)	291	WP_187980108.1	phosphodiesterase	-
BGI51_RS01575 (BGI51_01555)	-	325801..326517 (+)	717	WP_187980109.1	glycerophosphodiester phosphodiesterase	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 78838.26 Da
• Isoelectric Point: 10.1932

>NTDB_id=194566 BGI51_RS01545 WP_187980106.1 319308..321548(-) (comA) [Pseudomonas oryzihabitans strain KNF2016]
MRAALLSFALGVLLLRAFATLPSLSLLAALAAVALVLLFTRFLALGAFGLGLAWALLNGHWALDDRLDPTLEQRVLWIDG
EISGLPTVEADSVGFVLAGATSRRALKLPARIRLSWHGGPRPLAGERWRLAAELRGPAGLVNPLGQDREAWLLAQGIGAT
GSVKDGQRLAAASGLATWRDGIRQYLQTRDPAGQGGLLAALVVGDGSGITTAQWQLFQDTGTVHLMVISGQHIGLIALGV
YAGVVLLARRGLWPRQLPWRLSAAVLTIATALGYGLLAGFEVPVQRACVMVTLGLLWQLGRQQVRLADAVLLALALVLAA
NPLVSLLPGFWLSFGAVLLLLWSFAGRLGRLPWWLTLGRAQWCMAVGLAPLLLALGLPLSPSGPLANALAVPLMDLAIVP
LALAGTLLSLLWSPLGTPALLLAGGLLQGLLWLLSGLAHLAAAWQPVLAPAWALWLAGLGALLALLPAGVPLRGFGVLLM
LPGLFPPSPVPAAGLARITVLDVGQGLAVLVRTRDHALLYDAGPRQGSYDSGARVVLPNLQALGIDTLDVMLLSHADADH
AGGAPAVARGLPPGQVLSGEAGRLQPELHARDCTDGAEWRWNEVVFTTWWHPAADSNASSCVLSVAARGERLLLTGDIDA
RREAELVASGVPLAAEWLVAPHHGSRSGSSAAFIDAVQPRGVLISRGLNNRYGHPHPQVLARYRERGVLPYDTAALGALS
WTLGRWEVPHGQRQVRHWWRIGPPTP

Nucleotide

• Length: 2241 bp

>NTDB_id=194566 BGI51_RS01545 WP_187980106.1 319308..321548(-) (comA) [Pseudomonas oryzihabitans strain KNF2016]
ATGCGCGCCGCTCTGCTGTCCTTCGCCCTGGGCGTGCTGCTCCTGCGCGCCTTCGCCACACTGCCGTCGCTATCCCTGCT
GGCGGCCCTCGCGGCGGTGGCCCTGGTGCTCCTGTTCACCCGCTTCCTGGCGCTCGGTGCCTTCGGGCTGGGCCTGGCCT
GGGCGCTGCTCAATGGTCACTGGGCGCTGGACGATCGCCTGGATCCGACGCTGGAACAGCGGGTGCTGTGGATCGACGGC
GAGATCAGCGGCCTGCCCACGGTGGAGGCCGACTCGGTGGGTTTCGTGCTCGCCGGGGCAACCAGCCGCCGCGCGCTGAA
GCTGCCGGCGCGGATCCGCCTGAGCTGGCACGGCGGGCCGCGCCCACTGGCCGGCGAACGCTGGCGCCTGGCCGCGGAGC
TGCGCGGCCCCGCGGGTCTGGTCAACCCCCTCGGGCAGGATCGCGAAGCCTGGCTGCTGGCCCAGGGCATAGGCGCCACC
GGCAGCGTCAAGGATGGCCAGCGCCTGGCCGCCGCCAGTGGCCTGGCGACCTGGCGCGACGGCATCCGGCAATACCTGCA
GACGCGGGATCCGGCGGGGCAGGGTGGGCTGCTCGCCGCCCTGGTGGTGGGCGACGGCTCGGGTATCACCACTGCCCAGT
GGCAGCTGTTCCAGGACACCGGCACCGTGCACCTGATGGTGATCTCCGGGCAGCACATCGGCCTGATCGCCCTAGGCGTT
TATGCCGGGGTGGTCCTTCTGGCACGCCGTGGCCTCTGGCCGCGTCAACTGCCCTGGCGTCTGTCCGCGGCGGTGCTGAC
GATCGCCACCGCACTGGGCTACGGACTGCTGGCCGGCTTCGAGGTGCCGGTGCAGCGGGCCTGCGTCATGGTCACCCTGG
GCCTGCTCTGGCAACTCGGGCGCCAGCAGGTGCGGCTGGCGGACGCGGTCCTGCTGGCCCTGGCACTGGTGCTGGCCGCC
AATCCGCTGGTCAGTCTGCTGCCCGGATTCTGGCTGTCCTTTGGCGCCGTGCTGTTGCTGCTGTGGAGCTTTGCCGGCCG
CCTGGGCCGATTGCCCTGGTGGCTCACCCTCGGGCGCGCTCAGTGGTGCATGGCCGTGGGCCTGGCGCCGCTGCTCCTGG
CGCTGGGCCTGCCCCTGAGTCCGAGCGGCCCGCTGGCCAATGCCCTGGCCGTGCCGCTGATGGACCTGGCCATCGTGCCC
CTGGCGCTGGCGGGGACCCTGCTGTCCCTGCTCTGGTCGCCGCTGGGGACGCCGGCCTTGCTGCTGGCGGGTGGCCTGCT
GCAGGGGCTGCTCTGGCTGCTGAGCGGCTTGGCGCACCTGGCTGCAGCCTGGCAGCCGGTCCTCGCGCCCGCCTGGGCGC
TGTGGCTGGCGGGGCTGGGGGCGCTGCTGGCGCTACTGCCCGCGGGTGTGCCGCTACGAGGCTTCGGCGTGCTGCTGATG
CTGCCGGGGCTGTTTCCCCCGTCGCCGGTACCCGCGGCGGGGCTGGCGCGGATCACCGTGCTGGACGTGGGGCAGGGCCT
GGCGGTGCTGGTGCGCACCCGCGACCATGCGCTGCTCTACGACGCCGGGCCGCGCCAGGGCAGCTATGACAGCGGCGCCC
GGGTCGTCCTGCCCAACCTGCAGGCCCTTGGCATCGACACCCTGGACGTCATGCTGCTCAGTCATGCCGATGCCGACCAC
GCCGGCGGTGCGCCGGCCGTGGCCAGAGGACTGCCGCCAGGACAGGTACTCAGCGGCGAGGCGGGTCGGCTCCAGCCGGA
ATTGCACGCGCGGGATTGCACGGATGGGGCCGAGTGGCGCTGGAACGAGGTCGTCTTCACCACCTGGTGGCACCCCGCGG
CGGATTCCAACGCCTCCTCCTGCGTGCTCAGCGTCGCCGCGAGGGGCGAGCGCCTGCTGCTGACCGGCGACATCGATGCC
CGCCGTGAAGCCGAGCTGGTGGCCAGCGGGGTGCCGCTGGCAGCCGAGTGGCTGGTCGCTCCGCACCATGGCAGTCGCAG
CGGTTCCAGCGCCGCCTTCATCGACGCCGTCCAGCCGCGCGGCGTACTGATCTCCCGGGGGCTGAACAATCGCTATGGCC
ATCCCCATCCCCAGGTGCTGGCGCGCTATCGCGAGCGCGGCGTGCTGCCCTACGACACCGCCGCGCTGGGCGCCCTGAGC
TGGACCCTGGGTCGCTGGGAGGTACCGCACGGGCAGCGCCAGGTGCGGCATTGGTGGCGGATAGGCCCGCCGACACCCTG
A

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-687)

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Competence protein (Competence) (201-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	55.479	96.649	0.536