Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BGI51_RS01540 Genome accession   NZ_CP017024
Coordinates   318624..319259 (-) Length   211 a.a.
NCBI ID   WP_059315847.1    Uniprot ID   A0AAX3L304
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313624..324259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS01505 (BGI51_01485) petA 314161..314739 (-) 579 WP_187980101.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  BGI51_RS01510 (BGI51_01490) murB 314736..315758 (-) 1023 WP_187980102.1 UDP-N-acetylmuramate dehydrogenase -
  BGI51_RS01515 (BGI51_01495) - 315748..316215 (-) 468 WP_187981249.1 low molecular weight protein-tyrosine-phosphatase -
  BGI51_RS01520 (BGI51_01500) kdsB 316222..316986 (-) 765 WP_187980103.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BGI51_RS01525 (BGI51_01505) - 316983..317168 (-) 186 WP_007162406.1 Trm112 family protein -
  BGI51_RS01530 (BGI51_01510) lpxK 317183..318190 (-) 1008 WP_187980104.1 tetraacyldisaccharide 4'-kinase -
  BGI51_RS01535 (BGI51_01515) - 318187..318627 (-) 441 WP_187980105.1 biopolymer transporter ExbD -
  BGI51_RS01540 (BGI51_01520) exbB 318624..319259 (-) 636 WP_059315847.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BGI51_RS01545 (BGI51_01525) comA 319308..321548 (-) 2241 WP_187980106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BGI51_RS01550 (BGI51_01530) - 321653..322894 (-) 1242 WP_187980107.1 lipoprotein-releasing ABC transporter permease subunit -
  BGI51_RS01555 (BGI51_01535) lolD 322902..323603 (-) 702 WP_026083696.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23065.12 Da        Isoelectric Point: 6.8860

>NTDB_id=194565 BGI51_RS01540 WP_059315847.1 318624..319259(-) (exbB) [Pseudomonas oryzihabitans strain KNF2016]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRSRVAPPTLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAT
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGAPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=194565 BGI51_RS01540 WP_059315847.1 318624..319259(-) (exbB) [Pseudomonas oryzihabitans strain KNF2016]
GTGTTCGAAATGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATCCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTGAGACGCAGCCGGGTGGCACCGCCGACGCTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AGCAGCTCAATGCCGAGCGGCTGCGCGAATTGCGCGCCGGATCGCCCCTGGGCGACATCCTCGCCGCGGGCCTGACCAAC
TCCCGTCATGGCCGCGACATCATGAAGGAAGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCACGACCTCGAACGCTATCT
CAACACCCTCGGCAGCATCGCCGCCCTGGCACCCCTGATGGGCCTGCTCGGCACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTCATGAACGACGGCATGGCCAATGCGCCCATCCTCGCCGGCGGCATCTCCAAGGCGCTGGTCACCACCGCCACC
GGCCTGCTGGTGGCGATTCCCGCGGTGTTCTTCCATCGCTACCTGCTGCGCCGGGTCGATGAGCTGGTGGTCGGAATGGA
GCAGGAAGCGGTCAAGCTGGTGGACATCCTCCACGGCGATCGCGAGGTGGACGTCCGCGAAGGGGCTCCGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75

98.578

0.739

Multiple sequence alignment