Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BGI23_RS06055 Genome accession   NZ_CP017016
Coordinates   1165617..1167443 (+) Length   608 a.a.
NCBI ID   WP_070805492.1    Uniprot ID   -
Organism   Bacillus sp. ABP14     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160617..1172443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS06035 (BGI23_06035) - 1160927..1161601 (-) 675 WP_000362601.1 TerC family protein -
  BGI23_RS06040 (BGI23_06040) mecA 1161941..1162624 (+) 684 WP_000350710.1 adaptor protein MecA Regulator
  BGI23_RS06045 (BGI23_06045) - 1162697..1164241 (+) 1545 WP_070805490.1 cardiolipin synthase -
  BGI23_RS06050 (BGI23_06050) - 1164322..1165566 (+) 1245 WP_070805491.1 competence protein CoiA -
  BGI23_RS06055 (BGI23_06055) pepF 1165617..1167443 (+) 1827 WP_070805492.1 oligoendopeptidase F Regulator
  BGI23_RS28320 (BGI23_06060) - 1167561..1167734 (-) 174 WP_000754592.1 hypothetical protein -
  BGI23_RS06065 (BGI23_06065) - 1167964..1168857 (-) 894 WP_070805493.1 ClpXP adapter SpxH family protein -
  BGI23_RS06070 (BGI23_06070) - 1168857..1169255 (-) 399 WP_000043380.1 hypothetical protein -
  BGI23_RS06075 (BGI23_06075) - 1169436..1170014 (-) 579 WP_070805494.1 CYTH domain-containing protein -
  BGI23_RS06080 (BGI23_06080) - 1170161..1170532 (+) 372 WP_070805495.1 hypothetical protein -
  BGI23_RS06085 (BGI23_06085) - 1170563..1171201 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  BGI23_RS06090 (BGI23_06090) - 1171220..1172017 (+) 798 WP_000673184.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70288.56 Da        Isoelectric Point: 4.6629

>NTDB_id=194485 BGI23_RS06055 WP_070805492.1 1165617..1167443(+) (pepF) [Bacillus sp. ABP14]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEQEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESNDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVQSVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=194485 BGI23_RS06055 WP_070805492.1 1165617..1167443(+) (pepF) [Bacillus sp. ABP14]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGTAACGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAACAGGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGTGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTA
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGGAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAACTTTAATGCACGCGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTCAATCTGTAAATGACAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGAGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGGGATTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACACCAGACATGCTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment