Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CCX85_RS08360 Genome accession   NZ_CP021640
Coordinates   1665598..1666272 (-) Length   224 a.a.
NCBI ID   WP_101248475.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain JS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660598..1671272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS08345 (CCX85_08335) - 1662236..1663624 (-) 1389 WP_020837818.1 sensor histidine kinase -
  CCX85_RS08350 (CCX85_08340) - 1663621..1664274 (-) 654 WP_002991237.1 response regulator transcription factor -
  CCX85_RS08355 (CCX85_08345) - 1664368..1665585 (-) 1218 WP_002993552.1 ABC transporter permease -
  CCX85_RS08360 (CCX85_08350) amiE 1665598..1666272 (-) 675 WP_101248475.1 ABC transporter ATP-binding protein Regulator
  CCX85_RS08365 (CCX85_08355) - 1666259..1667527 (-) 1269 WP_011285226.1 efflux RND transporter periplasmic adaptor subunit -
  CCX85_RS08370 (CCX85_08360) - 1667951..1668235 (-) 285 WP_002982442.1 hypothetical protein -
  CCX85_RS08375 (CCX85_08365) - 1668382..1668678 (-) 297 WP_038432642.1 DUF4298 domain-containing protein -
  CCX85_RS08380 (CCX85_08370) - 1668922..1669158 (+) 237 WP_012561051.1 hypothetical protein -
  CCX85_RS08385 (CCX85_08375) prsA 1669419..1670348 (-) 930 WP_002993567.1 peptidylprolyl isomerase PrsA -
  CCX85_RS08390 (CCX85_08380) - 1670404..1670721 (-) 318 WP_080286977.1 hypothetical protein -
  CCX85_RS08395 (CCX85_08385) - 1670828..1671133 (-) 306 WP_002993568.1 Spi family protease inhibitor -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24874.76 Da        Isoelectric Point: 6.2644

>NTDB_id=194481 CCX85_RS08360 WP_101248475.1 1665598..1666272(-) (amiE) [Streptococcus pyogenes strain JS12]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSYIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=194481 CCX85_RS08360 WP_101248475.1 1665598..1666272(-) (amiE) [Streptococcus pyogenes strain JS12]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGCAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGATTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCTATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366

Multiple sequence alignment