Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CCX85_RS06670 Genome accession   NZ_CP021640
Coordinates   1316073..1316714 (-) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain JS12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311073..1321714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS06645 (CCX85_06650) comFA/cflA 1311160..1312485 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  CCX85_RS06650 (CCX85_06655) - 1312540..1313172 (+) 633 WP_002988970.1 YigZ family protein -
  CCX85_RS06655 (CCX85_06660) cysK 1313300..1314241 (+) 942 WP_002991877.1 cysteine synthase A -
  CCX85_RS06660 (CCX85_06665) - 1314259..1314636 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  CCX85_RS06665 (CCX85_06670) - 1314636..1316036 (-) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  CCX85_RS06670 (CCX85_06675) vraR 1316073..1316714 (-) 642 WP_002983671.1 response regulator transcription factor Regulator
  CCX85_RS06675 (CCX85_06680) - 1316707..1317711 (-) 1005 WP_002991890.1 sensor histidine kinase -
  CCX85_RS06680 (CCX85_06685) liaF 1317708..1318400 (-) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  CCX85_RS06685 (CCX85_06690) pknB 1318523..1320421 (-) 1899 WP_002994648.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  CCX85_RS06690 (CCX85_06695) - 1320418..1321158 (-) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=194463 CCX85_RS06670 WP_002983671.1 1316073..1316714(-) (vraR) [Streptococcus pyogenes strain JS12]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=194463 CCX85_RS06670 WP_002983671.1 1316073..1316714(-) (vraR) [Streptococcus pyogenes strain JS12]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAGGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCTTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCAGGAGCGAAGGGTTATATGTTAAAAAC
ATCGAGTGCGGCTGAAATTTTAAATGCCATTCGCAAGGTTTCAAAGGGAGAGTTAGCTATTGAAACAGAAGTTGACAAAA
AAATTAAGGCGCATGATCAACACCCTGACTTGCATGAGGAACTAACAGCGCGTGAGTATGATATTTTACACCTTTTAGCT
AAAGGGTATGATAATCAGACCATCGCTGATGAACTCTTTATTTCCTTAAAAACCGTCAAAACACATGTGTCCAATATTCT
AGCCAAGTTAGAAGTTGATGACCGAACCCAAGCGGTTGTCTATGCTTTTCGACACCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385