Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CCD84_RS04930 Genome accession   NZ_CP021520
Coordinates   827327..828004 (-) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis strain 11-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822327..833004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS04915 (CCD84_04940) hflX 823913..825091 (-) 1179 WP_002219225.1 GTPase HflX -
  CCD84_RS04920 (CCD84_04945) - 825096..826376 (-) 1281 WP_002219224.1 CAP domain-containing protein -
  CCD84_RS12805 - 826378..826506 (+) 129 WP_009347251.1 hypothetical protein -
  CCD84_RS04925 (CCD84_04950) - 826529..827254 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  CCD84_RS04930 (CCD84_04955) ysxA/radC 827327..828004 (-) 678 WP_002213447.1 DNA repair protein RadC Machinery gene
  CCD84_RS12810 - 828031..828153 (+) 123 WP_255294323.1 hypothetical protein -
  CCD84_RS04935 (CCD84_04960) gshA 828127..829476 (-) 1350 WP_002229416.1 glutamate--cysteine ligase -
  CCD84_RS04940 (CCD84_04965) leuC 829736..831145 (+) 1410 WP_002229418.1 3-isopropylmalate dehydratase large subunit -
  CCD84_RS04945 (CCD84_04970) - 831242..831496 (+) 255 WP_002213442.1 hypothetical protein -
  CCD84_RS04950 (CCD84_04975) leuD 831558..832199 (+) 642 WP_002217111.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=193976 CCD84_RS04930 WP_002213447.1 827327..828004(-) (ysxA/radC) [Neisseria meningitidis strain 11-7]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=193976 CCD84_RS04930 WP_002213447.1 827327..828004(-) (ysxA/radC) [Neisseria meningitidis strain 11-7]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment