Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BARD7_RS10765 Genome accession   NZ_CP016913
Coordinates   2218849..2220579 (-) Length   576 a.a.
NCBI ID   WP_065981858.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213849..2225579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS10740 (BARD7_02204) - 2214210..2214422 (+) 213 WP_014470647.1 spore germination protein -
  BARD7_RS10745 (BARD7_02205) - 2214547..2214759 (+) 213 WP_013352823.1 spore germination protein -
  BARD7_RS10750 (BARD7_02206) alr 2214952..2216133 (+) 1182 WP_065981856.1 alanine racemase -
  BARD7_RS10755 (BARD7_02208) spo0A 2216324..2217124 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  BARD7_RS10760 (BARD7_02209) spoIVB 2217405..2218685 (-) 1281 WP_065981857.1 SpoIVB peptidase -
  BARD7_RS10765 (BARD7_02210) recN 2218849..2220579 (-) 1731 WP_065981858.1 DNA repair protein RecN Machinery gene
  BARD7_RS10770 (BARD7_02211) ahrC 2220611..2221060 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  BARD7_RS10775 (BARD7_02212) - 2221157..2222002 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  BARD7_RS10780 (BARD7_02213) dxs 2221999..2223900 (-) 1902 WP_045510685.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BARD7_RS10785 (BARD7_02214) - 2224044..2224934 (-) 891 WP_065981859.1 polyprenyl synthetase family protein -
  BARD7_RS10790 (BARD7_02215) - 2224924..2225178 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64081.95 Da        Isoelectric Point: 4.7333

>NTDB_id=193627 BARD7_RS10765 WP_065981858.1 2218849..2220579(-) (recN) [Bacillus amyloliquefaciens strain RD7-7]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEILQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTRVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=193627 BARD7_RS10765 WP_065981858.1 2218849..2220579(-) (recN) [Bacillus amyloliquefaciens strain RD7-7]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTGGATAAATTTGCGGGTGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGGGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATTGAATCGGCGAAGCTTGAATTGAATGAAGACGAGATTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCGACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACATTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGTATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAGGAATTAAAAGACGGCCGGACGACAACGCGTGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.41

100

0.894

Multiple sequence alignment