Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BARD7_RS05475 Genome accession   NZ_CP016913
Coordinates   1120681..1122510 (+) Length   609 a.a.
NCBI ID   WP_013351834.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115681..1127510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS05450 (BARD7_01107) - 1116344..1116922 (+) 579 WP_013351830.1 GNAT family N-acetyltransferase -
  BARD7_RS05455 (BARD7_01108) spx 1117100..1117495 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  BARD7_RS05460 (BARD7_01109) - 1117553..1118209 (-) 657 WP_065981171.1 TerC family protein -
  BARD7_RS05465 (BARD7_01110) mecA 1118485..1119141 (+) 657 WP_065981172.1 adaptor protein MecA Regulator
  BARD7_RS05470 (BARD7_01111) - 1119292..1120452 (+) 1161 WP_065981173.1 competence protein CoiA family protein -
  BARD7_RS05475 (BARD7_01112) pepF 1120681..1122510 (+) 1830 WP_013351834.1 oligoendopeptidase F Regulator
  BARD7_RS19090 (BARD7_01113) - 1122546..1122713 (-) 168 WP_016938224.1 hypothetical protein -
  BARD7_RS05480 (BARD7_01114) spxH 1122998..1123900 (-) 903 WP_013351835.1 protease adaptor protein SpxH -
  BARD7_RS05485 (BARD7_01115) - 1123897..1124295 (-) 399 WP_065981174.1 thiol management oxidoreductase -
  BARD7_RS05490 (BARD7_01116) - 1124520..1125206 (-) 687 WP_065981175.1 lytic transglycosylase domain-containing protein -
  BARD7_RS05495 (BARD7_01117) - 1125211..1125783 (-) 573 WP_065981176.1 CYTH domain-containing protein -
  BARD7_RS05500 (BARD7_01118) - 1125908..1126273 (+) 366 WP_013351839.1 hypothetical protein -
  BARD7_RS05505 (BARD7_01119) yjbM 1126301..1126936 (+) 636 WP_013351840.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69744.39 Da        Isoelectric Point: 5.4370

>NTDB_id=193614 BARD7_RS05475 WP_013351834.1 1120681..1122510(+) (pepF) [Bacillus amyloliquefaciens strain RD7-7]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKVYSHAIEEITKQRPHVLSEK
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDENGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNNIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHNYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGDEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDTVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNKLYYDLNKKYFGDNMVIDEEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTNFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=193614 BARD7_RS05475 WP_013351834.1 1120681..1122510(+) (pepF) [Bacillus amyloliquefaciens strain RD7-7]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGAAAACTTTAC
GCATACGCGCATATGCGCTCAGATCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCCGCCAGTGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTTAAGGTTTACTCCCATGCCATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGCGAAAAA
GAAGAGGCCCTGCTTGCGGAAGCTTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTGTTTTAAACAACGCTGATAT
TACGTTTCCGTCGATAAAAGATGAAAACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAACTTTCTGGAAAGCA
GTGATCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGATAATTTCTACGCCCGTGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAACATCCCTGAAGAAGTTTATGATAACCTTATTAAAACGATCAATAAACATCTTCCGTTACTACACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGACGAAGTCCATAATTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGATGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAACCCGTACATCTTAATGAACTGGCACGACACTGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTATCTTCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGTTAACGCCTGAACTGCTGAACAAGCTTTATTATGATCTGAATAAAAAGTATTTCGGAGACAACATGGT
AATTGATGAAGAAATCAGCCTGGAATGGTCAAGAATTCCTCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCTCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCAACTTCTTA
AAAGCCGGAAGCTCAGAATATCCGATCGACATCCTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAAGC
TGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTCCTTTCGAAAGTGAATCCTTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488

Multiple sequence alignment