Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BARD7_RS01760 Genome accession   NZ_CP016913
Coordinates   362579..363016 (-) Length   145 a.a.
NCBI ID   WP_065980672.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357579..368016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS01735 (BARD7_00352) - 358597..359733 (+) 1137 WP_065982842.1 zinc-dependent alcohol dehydrogenase -
  BARD7_RS01740 (BARD7_00353) - 359748..360182 (+) 435 WP_013350964.1 RDD family protein -
  BARD7_RS01745 (BARD7_00354) - 360255..360578 (+) 324 WP_065980670.1 YckD family protein -
  BARD7_RS01750 (BARD7_00355) - 360683..362119 (+) 1437 WP_065980671.1 glycoside hydrolase family 1 protein -
  BARD7_RS01755 (BARD7_00356) nin/comJ 362160..362558 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  BARD7_RS01760 (BARD7_00357) nucA/comI 362579..363016 (-) 438 WP_065980672.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BARD7_RS01765 (BARD7_00358) hxlB 363366..363923 (-) 558 WP_065980673.1 6-phospho-3-hexuloisomerase -
  BARD7_RS01770 (BARD7_00359) hxlA 363920..364555 (-) 636 WP_065980674.1 3-hexulose-6-phosphate synthase -
  BARD7_RS01775 (BARD7_00360) - 364787..365149 (+) 363 WP_013350971.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=193596 BARD7_RS01760 WP_065980672.1 362579..363016(-) (nucA/comI) [Bacillus amyloliquefaciens strain RD7-7]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKIILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=193596 BARD7_RS01760 WP_065980672.1 362579..363016(-) (nucA/comI) [Bacillus amyloliquefaciens strain RD7-7]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGATAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment