Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BARD7_RS01755 Genome accession   NZ_CP016913
Coordinates   362160..362558 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357160..367558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS01730 (BARD7_00351) - 357331..358533 (+) 1203 WP_065980669.1 GTP-binding protein -
  BARD7_RS01735 (BARD7_00352) - 358597..359733 (+) 1137 WP_065982842.1 zinc-dependent alcohol dehydrogenase -
  BARD7_RS01740 (BARD7_00353) - 359748..360182 (+) 435 WP_013350964.1 RDD family protein -
  BARD7_RS01745 (BARD7_00354) - 360255..360578 (+) 324 WP_065980670.1 YckD family protein -
  BARD7_RS01750 (BARD7_00355) - 360683..362119 (+) 1437 WP_065980671.1 glycoside hydrolase family 1 protein -
  BARD7_RS01755 (BARD7_00356) nin/comJ 362160..362558 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  BARD7_RS01760 (BARD7_00357) nucA/comI 362579..363016 (-) 438 WP_065980672.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BARD7_RS01765 (BARD7_00358) hxlB 363366..363923 (-) 558 WP_065980673.1 6-phospho-3-hexuloisomerase -
  BARD7_RS01770 (BARD7_00359) hxlA 363920..364555 (-) 636 WP_065980674.1 3-hexulose-6-phosphate synthase -
  BARD7_RS01775 (BARD7_00360) - 364787..365149 (+) 363 WP_013350971.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=193595 BARD7_RS01755 WP_013350967.1 362160..362558(-) (nin/comJ) [Bacillus amyloliquefaciens strain RD7-7]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=193595 BARD7_RS01755 WP_013350967.1 362160..362558(-) (nin/comJ) [Bacillus amyloliquefaciens strain RD7-7]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCAGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAAGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTCATGTCAAAACGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATCGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment