Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   S101267_RS16390 Genome accession   NZ_CP021505
Coordinates   3134433..3135308 (-) Length   291 a.a.
NCBI ID   WP_013353397.1    Uniprot ID   A0A9P1JJW3
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3129433..3140308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS16355 (S101267_03294) - 3129621..3130097 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  S101267_RS16360 (S101267_03295) - 3130097..3130381 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  S101267_RS16365 (S101267_03296) mnhG 3130365..3130739 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  S101267_RS16370 (S101267_03297) - 3130779..3131162 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  S101267_RS16375 (S101267_03298) comA 3131184..3131828 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  S101267_RS16380 (S101267_03299) comP 3131909..3134215 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  S101267_RS16385 (S101267_03300) comX 3134238..3134414 (-) 177 WP_013353396.1 competence pheromone ComX -
  S101267_RS16390 (S101267_03301) comQ 3134433..3135308 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  S101267_RS16395 (S101267_03302) degQ 3135460..3135600 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  S101267_RS16405 (S101267_03303) - 3136065..3136406 (+) 342 WP_013353399.1 hypothetical protein -
  S101267_RS16410 (S101267_03304) - 3136413..3137636 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  S101267_RS16415 (S101267_03305) - 3137766..3139232 (-) 1467 WP_088030648.1 nicotinate phosphoribosyltransferase -
  S101267_RS16420 (S101267_03306) - 3139250..3139801 (-) 552 WP_013353402.1 cysteine hydrolase family protein -
  S101267_RS16425 (S101267_03307) - 3139882..3140277 (-) 396 WP_013353403.1 YueI family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33461.48 Da        Isoelectric Point: 5.9224

>NTDB_id=193559 S101267_RS16390 WP_013353397.1 3134433..3135308(-) (comQ) [Bacillus amyloliquefaciens strain SRCM101267]
MCLDAETIKGKMKEIVGDKVDNLHLEETLLTFINEKKHFSFGVLAFQHYVAFKGTHSSEITLLAAGIELLILAFDIFDDI
EDEDNFNKAWMQTDHAISLNAATSLYSISLQAICELESNIDFSRLAIKYALNAMQGQHNDLRNFPETEEECLHMIKQKSG
SLTAMSAVLGAMLASGEFNATIENYSYKIGVIKQIENDYYGLFDKSRSDIKKKKRTLINLFLNRQFNSASKKVLNMMNSK
NSYYSLISDRNYFEELLCKAGVRQYVLMLIKIYENEIYNEMEKLNIRIKLW

Nucleotide


Download         Length: 876 bp        

>NTDB_id=193559 S101267_RS16390 WP_013353397.1 3134433..3135308(-) (comQ) [Bacillus amyloliquefaciens strain SRCM101267]
ATGTGTTTAGATGCCGAAACGATTAAAGGGAAGATGAAGGAAATTGTTGGGGATAAAGTCGATAATCTACATTTAGAAGA
GACTCTTTTGACCTTCATTAATGAAAAGAAGCACTTTTCATTCGGTGTCCTTGCTTTCCAGCATTATGTTGCTTTTAAGG
GTACACATTCCTCGGAAATCACACTACTGGCCGCTGGAATTGAACTTTTAATTTTAGCTTTTGATATTTTTGACGATATT
GAAGATGAAGATAACTTTAATAAGGCATGGATGCAAACTGACCATGCTATATCCCTGAATGCGGCTACTTCTCTGTATTC
AATAAGCCTGCAAGCCATTTGTGAGCTTGAATCAAACATCGATTTTTCAAGACTTGCAATAAAATATGCCCTAAATGCAA
TGCAAGGTCAGCATAATGATCTAAGAAATTTCCCGGAGACTGAAGAAGAGTGTTTACATATGATAAAACAGAAATCAGGA
TCGTTAACTGCAATGTCAGCTGTTTTAGGGGCGATGCTTGCAAGTGGTGAATTTAACGCAACAATTGAGAATTATTCTTA
TAAAATTGGCGTTATTAAACAAATTGAAAATGACTATTATGGTTTATTTGATAAAAGCCGTAGTGATATAAAGAAGAAGA
AAAGAACTTTGATAAACTTGTTTTTAAATCGTCAGTTTAATAGTGCCTCAAAAAAAGTTTTAAATATGATGAATTCTAAA
AACAGCTATTACTCTCTCATATCGGACAGAAATTATTTTGAAGAATTGCTGTGTAAAGCAGGAGTCAGACAATATGTTTT
AATGTTAATTAAAATATATGAAAATGAAATTTATAACGAAATGGAAAAGTTGAACATAAGAATTAAACTATGGTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(44-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

46.182

94.502

0.436