Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BB050_RS08615 Genome accession   NZ_CP016907
Coordinates   2009084..2010445 (-) Length   453 a.a.
NCBI ID   WP_066033295.1    Uniprot ID   A0AAC9D3G9
Organism   Flavobacterium anhuiense strain GSE09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004084..2015445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB050_RS08600 (BB050_01748) - 2004551..2005495 (+) 945 WP_008465496.1 OmpA/MotB family protein -
  BB050_RS08605 (BB050_01749) - 2005747..2006784 (+) 1038 WP_066033293.1 aldo/keto reductase -
  BB050_RS21840 - 2006905..2007063 (+) 159 WP_164085585.1 hypothetical protein -
  BB050_RS08610 (BB050_01750) - 2007099..2009063 (-) 1965 WP_066033294.1 transglycosylase domain-containing protein -
  BB050_RS08615 (BB050_01751) radA 2009084..2010445 (-) 1362 WP_066033295.1 DNA repair protein RadA Machinery gene
  BB050_RS08620 (BB050_01752) - 2010445..2011599 (-) 1155 WP_066035123.1 alpha/beta hydrolase -
  BB050_RS08625 (BB050_01753) panD 2011805..2012155 (-) 351 WP_008465481.1 aspartate 1-decarboxylase -
  BB050_RS08630 (BB050_01754) panC 2012170..2013048 (-) 879 WP_066033296.1 pantoate--beta-alanine ligase -
  BB050_RS08635 (BB050_01755) - 2013126..2013932 (+) 807 WP_008465476.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49796.21 Da        Isoelectric Point: 6.1002

>NTDB_id=193560 BB050_RS08615 WP_066033295.1 2009084..2010445(-) (radA) [Flavobacterium anhuiense strain GSE09]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPTSKAPKPLKINEIDSKQEVRMDTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
ETIEPEVVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFDTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=193560 BB050_RS08615 WP_066033295.1 2009084..2010445(-) (radA) [Flavobacterium anhuiense strain GSE09]
ATGTCAAAAGTTAAAACTTCCTTTTTCTGCCAAAACTGCGGAACCCAATATGCCAAATGGCAAGGGCAATGCAACGCGTG
CAAAGAATGGAATACGATTGCTGAAGAAATTATCCAGAAACAGGATAAAGTAGCTTGGAAAAGCGAGCCTACTCCAACAA
GCAAAGCACCAAAGCCTTTAAAAATTAACGAAATTGATTCCAAACAGGAAGTCCGAATGGACACAACCGACAGCGAATTG
AATCGTGTTTTGGGTGGCGGACTTGTTCCTGGATCTTTAACACTTTTAGGTGGTGAACCCGGCATCGGAAAAAGTACACT
TTTGCTTCAAGTTTCGTTAAAACTACCTTATAAGACATTATACGTTTCTGGAGAAGAAAGCCAGAAACAGATAAAAATGC
GTGCAGAAAGAATTACGCCAAACAGCGACAACTGCTATATTCTTACTGAAACCAAAACGCAAAACATCTTCAAACAGATT
GAAACCATTGAGCCTGAAGTAGTCATTATCGACTCGATTCAGACCTTACATACCGATTATATCGAATCTACAGCGGGAAG
CATTTCCCAGATTCGCGAAACCACGGCAGAGTTGATCAAATTTGCTAAAGAAAGCAACATTCCAGTAATTTTAATTGGCC
ATATTACCAAAGACGGAAATATCGCAGGGCCAAAAATTTTAGAACATATGGTTGACACCGTTCTTCAATTTGAAGGAGAT
AGAAATCATATCTATAGAATTTTGCGTTCGCTTAAAAACCGTTTTGGTTCAACTTCCGAACTTGGTATTTATGAAATGCT
GGGAAGCGGTTTACGCGAAGTAAGCAATCCTTCTGAAATTCTGATTTCCCATAAAGACGAAGAACTTTCGGGAACTGCAA
TTGCAACAACTCTAGAAGGCATGCGGCCGTTGATGATTGAAATACAATCTTTGGTTAGCACCGCAGTTTACGGAACTCCT
CAGCGAAGCACAACAGGTTACAATGCCAAAAGGCTAAACATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGATTCCGTTT
AGGCGCAAAAGATGTTTTCCTGAATGTTACCGGAGGAATTTCTGTTGATGATCCTGCAATTGACTTGGCCGTTGTTGCCG
CAATTTTATCTTCTAACGAAGACATTCCGGTTGGAAAAGGTTTCTGTTTTGCTGGCGAAGTTGGTTTATCTGGTGAAATC
CGTCCTGTAAATCGTGTGGATCAGCGCATTCAGGAAGCCGAAAAATTAGGTTTCGATACTATCTTTGTTTCTAAATACAA
TAAAATAGCTTTAAAGAACACGGGAATTAAAATTGAACTTGTTGCAAAAATTGAAGATGTTGCCAGCATTCTTTTTGGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.93

100

0.486
  radA Streptococcus pneumoniae Rx1

50.585

94.26

0.477
  radA Streptococcus pneumoniae D39

50.585

94.26

0.477
  radA Streptococcus pneumoniae R6

50.585

94.26

0.477
  radA Streptococcus pneumoniae TIGR4

50.585

94.26

0.477
  radA Streptococcus mitis SK321

50.585

94.26

0.477
  radA Streptococcus mitis NCTC 12261

50.585

94.26

0.477

Multiple sequence alignment