Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BEN76_RS11245 Genome accession   NZ_CP016896
Coordinates   2353920..2354576 (+) Length   218 a.a.
NCBI ID   WP_048763050.1    Uniprot ID   A0A0M1I800
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2348920..2359576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11230 (BEN76_11230) - 2349930..2350946 (-) 1017 WP_076033078.1 putative solute-binding protein -
  BEN76_RS11235 (BEN76_11235) - 2351037..2351864 (-) 828 WP_076033079.1 NAD(P)H-binding protein -
  BEN76_RS11240 (BEN76_11240) recG 2351888..2353933 (+) 2046 WP_076033080.1 ATP-dependent DNA helicase RecG -
  BEN76_RS11245 (BEN76_11245) comF 2353920..2354576 (+) 657 WP_048763050.1 ComF family protein Machinery gene
  BEN76_RS11250 (BEN76_11250) - 2354528..2354974 (-) 447 WP_076033081.1 NUDIX hydrolase -
  BEN76_RS11255 (BEN76_11255) - 2354971..2355555 (-) 585 WP_025095676.1 TIGR00730 family Rossman fold protein -
  BEN76_RS11260 (BEN76_11260) - 2355713..2356726 (+) 1014 WP_004934494.1 CorA family divalent cation transporter -
  BEN76_RS11265 (BEN76_11265) - 2356772..2357059 (-) 288 WP_025095677.1 STAS domain-containing protein -
  BEN76_RS11270 (BEN76_11270) - 2357072..2357704 (-) 633 WP_004934488.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BEN76_RS11275 (BEN76_11275) - 2357723..2358391 (-) 669 WP_076033082.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BEN76_RS11280 (BEN76_11280) mlaE 2358391..2359167 (-) 777 WP_004934483.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24989.13 Da        Isoelectric Point: 8.8756

>NTDB_id=193523 BEN76_RS11245 WP_048763050.1 2353920..2354576(+) (comF) [Acinetobacter soli strain GFJ2]
MPMFKAVYHSLHTLWQHTRHCPLCGHSAAHSPYVICTDCWQDLPWLNDSVLRHELNIQAACEYADPINQIVQQFKYHEKL
HHQRLLTQLILQLPLPRVQAIVPMPISTARLCERGYNQAMLIAEGVAKQLNLPIWQPVLRRAEHTQKGLSRLERIAGIEQ
QFVPDLRVRTRFRRVMIIDDVVTTGSSIYALSQALTTLGCQRIYPICVAAASVSREAR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=193523 BEN76_RS11245 WP_048763050.1 2353920..2354576(+) (comF) [Acinetobacter soli strain GFJ2]
ATGCCTATGTTTAAGGCAGTGTATCATTCATTACACACGCTCTGGCAGCACACGCGACATTGTCCGCTGTGCGGTCATTC
TGCCGCACACAGTCCATACGTCATTTGCACAGATTGCTGGCAAGATCTGCCGTGGCTCAATGATTCGGTGCTGCGCCATG
AATTGAACATTCAGGCAGCATGTGAATATGCCGACCCGATCAATCAGATTGTGCAGCAATTTAAATACCATGAAAAACTG
CATCATCAGCGCTTACTCACGCAACTGATTTTGCAACTTCCCTTACCGCGGGTTCAGGCCATTGTGCCAATGCCGATTTC
GACAGCGCGGCTTTGTGAACGTGGTTATAATCAAGCGATGCTGATTGCTGAAGGTGTCGCCAAACAGCTTAACCTTCCCA
TATGGCAACCCGTGCTGCGTCGGGCTGAACACACACAAAAGGGCTTAAGCCGATTAGAGCGCATCGCGGGTATTGAGCAG
CAATTCGTACCCGATTTGCGTGTGCGCACTCGCTTTCGGCGGGTCATGATTATCGATGATGTAGTCACGACAGGCAGCTC
AATTTACGCCTTGTCTCAAGCACTCACCACATTAGGATGCCAACGCATTTATCCGATCTGTGTCGCTGCGGCCTCTGTTT
CACGTGAAGCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I800

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.286

96.33

0.523
  comF Acinetobacter baumannii D1279779

54.286

96.33

0.523

Multiple sequence alignment