Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BFG52_RS01980 Genome accession   NZ_CP016895
Coordinates   446742..447371 (-) Length   209 a.a.
NCBI ID   WP_067551923.1    Uniprot ID   A0A1B2LWD9
Organism   Acinetobacter larvae strain BRTC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441742..452371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFG52_RS01945 (BFG52_01945) mlaE 441921..442700 (+) 780 WP_067551901.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BFG52_RS01950 (BFG52_01950) - 442700..443362 (+) 663 WP_067551904.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BFG52_RS01955 (BFG52_01955) - 443418..444047 (+) 630 WP_067551906.1 phospholipid-binding protein MlaC -
  BFG52_RS01960 (BFG52_01960) - 444065..444355 (+) 291 WP_067551909.1 lipid asymmetry maintenance protein MlaB -
  BFG52_RS01965 (BFG52_01965) - 444409..445422 (-) 1014 WP_067551915.1 CorA family divalent cation transporter -
  BFG52_RS01970 (BFG52_01970) - 445576..446163 (+) 588 WP_067551918.1 TIGR00730 family Rossman fold protein -
  BFG52_RS01975 (BFG52_01975) - 446178..446618 (+) 441 WP_081408590.1 NUDIX domain-containing protein -
  BFG52_RS01980 (BFG52_01980) comF 446742..447371 (-) 630 WP_067551923.1 ComF family protein Machinery gene
  BFG52_RS01985 (BFG52_01985) recG 447489..449534 (-) 2046 WP_067551926.1 ATP-dependent DNA helicase RecG -
  BFG52_RS01990 (BFG52_01990) - 449570..450388 (+) 819 WP_067551927.1 NAD-dependent epimerase/dehydratase family protein -
  BFG52_RS01995 (BFG52_01995) - 450470..450898 (+) 429 WP_228703794.1 GFA family protein -
  BFG52_RS02000 (BFG52_02000) - 451012..451386 (-) 375 WP_228703795.1 hypothetical protein -
  BFG52_RS02005 (BFG52_02005) - 451611..452315 (-) 705 WP_067551928.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24525.52 Da        Isoelectric Point: 8.7753

>NTDB_id=193491 BFG52_RS01980 WP_067551923.1 446742..447371(-) (comF) [Acinetobacter larvae strain BRTC-1]
MIYINTSYHYAKHTLGFGCLLCQLETQATHGLCQDCWQNLPWRLQCIHKHQLSIHCIFDYQFPINRIIQKFKYLQQLQYQ
RILLHALYRLKPTAIDAIVAMPISKQRLIERGYNQSLYLAQRLAKHWGCAIWQPIHRHAEQRQKGLNRFERMENIQQQFY
CPENPQHPYTRVLMLDDVVTTGSSLFALAQALQQLGCQQIDALCLAAAT

Nucleotide


Download         Length: 630 bp        

>NTDB_id=193491 BFG52_RS01980 WP_067551923.1 446742..447371(-) (comF) [Acinetobacter larvae strain BRTC-1]
ATGATATATATCAACACCAGCTATCACTATGCCAAACATACTCTGGGTTTTGGCTGTCTATTGTGTCAACTGGAAACACA
GGCTACCCACGGTTTGTGTCAAGATTGCTGGCAAAACTTACCTTGGCGGCTACAGTGTATACACAAACATCAACTGTCAA
TCCACTGTATATTTGACTACCAATTTCCAATCAACCGTATCATTCAAAAATTTAAATATCTACAACAACTGCAGTATCAA
CGTATCTTATTACATGCTTTATATCGACTAAAACCCACAGCAATCGATGCCATTGTGGCGATGCCAATTTCCAAGCAACG
TTTGATTGAGCGTGGCTATAATCAGAGTTTGTATTTGGCGCAACGACTCGCCAAACATTGGGGCTGTGCGATTTGGCAAC
CGATTCATCGTCATGCAGAGCAACGCCAAAAAGGCTTAAATCGTTTTGAACGCATGGAAAACATTCAACAGCAGTTTTAT
TGCCCCGAAAACCCCCAACACCCCTATACTCGGGTATTGATGCTAGATGATGTCGTCACCACAGGAAGCTCTTTATTTGC
CTTGGCTCAGGCCTTGCAACAGCTCGGCTGTCAGCAGATCGATGCACTCTGCCTTGCCGCTGCGACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2LWD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

53.403

91.388

0.488
  comF Acinetobacter baumannii D1279779

53.403

91.388

0.488

Multiple sequence alignment