Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   S101267_RS05400 Genome accession   NZ_CP021505
Coordinates   1013114..1013758 (+) Length   214 a.a.
NCBI ID   WP_013351649.1    Uniprot ID   A0A9P1JFV6
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008114..1018758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS05385 (S101267_01090) glpD 1008289..1009956 (+) 1668 WP_013351646.1 glycerol-3-phosphate dehydrogenase -
  S101267_RS05390 (S101267_01091) - 1010089..1011831 (+) 1743 WP_013351647.1 phospho-sugar mutase -
  S101267_RS05395 (S101267_01092) - 1011975..1013114 (+) 1140 WP_013351648.1 GAF domain-containing sensor histidine kinase -
  S101267_RS05400 (S101267_01093) vraR 1013114..1013758 (+) 645 WP_013351649.1 response regulator Regulator
  S101267_RS05405 (S101267_01094) - 1013759..1014283 (+) 525 WP_013351650.1 NADPH-dependent FMN reductase -
  S101267_RS05410 (S101267_01095) - 1014297..1014539 (-) 243 WP_013351651.1 YhdB family protein -
  S101267_RS05415 (S101267_01096) - 1014731..1015054 (+) 324 WP_013351652.1 DUF3889 domain-containing protein -
  S101267_RS05420 (S101267_01097) - 1015098..1016549 (-) 1452 WP_013351653.1 peptidoglycan endopeptidase -
  S101267_RS05425 (S101267_01098) nsrR 1016728..1017162 (-) 435 WP_065118578.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23814.18 Da        Isoelectric Point: 6.5013

>NTDB_id=193471 S101267_RS05400 WP_013351649.1 1013114..1013758(+) (vraR) [Bacillus amyloliquefaciens strain SRCM101267]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTGPDIILMDLSMPDMDGIEAANIAAERFPDISIVVL
TSYSDREHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEI
AKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVSGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=193471 S101267_RS05400 WP_013351649.1 1013114..1013758(+) (vraR) [Bacillus amyloliquefaciens strain SRCM101267]
ATGAAAATTGTGATCGCTGATGATCATCACGTTGTCCGCAAAGGACTACGCTATTTCTTCGCCACTCAGGAGGATATTGA
AGTTGTCGGTGAGGCGTCTACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGGGCCGGACATCATTTTAATGGACT
TATCAATGCCTGATATGGATGGCATTGAAGCGGCAAACATTGCGGCTGAACGATTTCCTGACATCAGCATAGTCGTGTTG
ACGAGCTATTCTGACCGGGAGCATGTCATTCCCGCTCTAAAAGCCGGCGCCAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGACTTAGTGAAAACACTTCGTGAAGTATATTCCGGACGTTACCGGCTGTCGGCGGACATTGTGCCTCACGTGCTCA
ATCATATGGTTCAGGATGATCAGAATAAGGAAAAATATTATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCCGCATCTCTGTTTATTTCTGAAAAAACAGTGAAGACCCATGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAAGCGGCATTGTATGCCGTAAAATATAATGTTTCTGGAAAGGCGGTAA
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JFV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.269

97.196

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393

Multiple sequence alignment