Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BSHJ0_RS13315 | Genome accession | NZ_CP016894 |
| Coordinates | 2544121..2544456 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain HJ0-6 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2539121..2549456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSHJ0_RS13295 (BSHJ0_02615) | gcvT | 2539714..2540802 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BSHJ0_RS13300 (BSHJ0_02616) | hepAA | 2541243..2542916 (+) | 1674 | WP_029726726.1 | DEAD/DEAH box helicase | - |
| BSHJ0_RS13305 (BSHJ0_02617) | yqhG | 2542937..2543731 (+) | 795 | WP_015714249.1 | YqhG family protein | - |
| BSHJ0_RS13310 (BSHJ0_02618) | sinI | 2543914..2544087 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| BSHJ0_RS13315 (BSHJ0_02619) | sinR | 2544121..2544456 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| BSHJ0_RS13320 (BSHJ0_02620) | tasA | 2544549..2545334 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| BSHJ0_RS13325 (BSHJ0_02621) | sipW | 2545398..2545970 (-) | 573 | WP_072692741.1 | signal peptidase I SipW | - |
| BSHJ0_RS13330 (BSHJ0_02622) | tapA | 2545954..2546715 (-) | 762 | WP_029726724.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BSHJ0_RS13335 (BSHJ0_02623) | yqzG | 2546986..2547312 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| BSHJ0_RS13340 (BSHJ0_02624) | spoIITA | 2547354..2547533 (-) | 180 | WP_029726723.1 | YqzE family protein | - |
| BSHJ0_RS13345 (BSHJ0_02625) | comGG | 2547605..2547979 (-) | 375 | WP_029726722.1 | ComG operon protein ComGG | Machinery gene |
| BSHJ0_RS13350 (BSHJ0_02626) | comGF | 2547980..2548363 (-) | 384 | WP_029726721.1 | ComG operon protein ComGF | Machinery gene |
| BSHJ0_RS13355 (BSHJ0_02627) | comGE | 2548389..2548736 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| BSHJ0_RS13360 (BSHJ0_02628) | comGD | 2548720..2549151 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| BSHJ0_RS13365 (BSHJ0_02629) | comGC | 2549141..2549437 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=193450 BSHJ0_RS13315 WP_003226345.1 2544121..2544456(+) (sinR) [Bacillus subtilis strain HJ0-6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=193450 BSHJ0_RS13315 WP_003226345.1 2544121..2544456(+) (sinR) [Bacillus subtilis strain HJ0-6]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |